UHGV-0160813

Genome information

Genome length 38,766 bps

CDS count 51

Completeness 88.16% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160813
vOTU ID	vOTU-027997
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_448451
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.02
Jumbo phage	No

Genome content
Genome length	38,766 bps
GC content	47.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.15%
Average CDS length	699.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160813_1	KOfam	K14059	int; integrase	NA
UHGV-0160813_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0160813_1	UniRef90	UniRef90_A0A374E696	Site-specific integrase	NA
UHGV-0160813_1	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0160813_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0160813_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0160813_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160813_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160813_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0160813_2	UniRef90	UniRef90_A0A173WST9	NA	NA
UHGV-0160813_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0160813_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160813_4	UniRef90	UniRef90_A0A358PUH8	XRE family transcriptional regulator	NA
UHGV-0160813_4	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160813_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160813_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160813_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0160813_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160813_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0160813_6	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-0160813_6	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0160813_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0160813_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160813_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0160813_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0160813_8	PHROG	phrog_6058	NA	unknown function
UHGV-0160813_8	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-0160813_8	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0160813_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160813_8	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0160813_10	PHROG	phrog_37702	NA	unknown function
UHGV-0160813_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160813_12	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0160813_12	Structural annotation	PF01446	NA	NA
UHGV-0160813_13	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0160813_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0160813_13	UniRef90	UniRef90_A0A4Q7PJQ5	RNase H superfamily protein	NA
UHGV-0160813_13	eggNOG-mapper	546274.EIKCOROL_00863	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0160813_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0160813_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0160813_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0160813_14	PHROG	phrog_7566	NA	unknown function
UHGV-0160813_14	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0160813_15	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0160813_16	PHROG	phrog_8470	NA	unknown function
UHGV-0160813_16	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0160813_16	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-0160813_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0160813_16	Structural annotation	PF14284	NA	NA
UHGV-0160813_17	PHROG	phrog_15077	NA	unknown function
UHGV-0160813_17	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0160813_17	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0160813_17	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0160813_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160813_22	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0160813_22	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0160813_22	Pfam	PF07374	NA	DUF1492
UHGV-0160813_22	Structural annotation	PF04545	NA	NA
UHGV-0160813_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0160813_23	UniRef90	UniRef90_UPI00189AF2D9	phage terminase small subunit	NA
UHGV-0160813_23	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0160813_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0160813_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0160813_23	COG	COG5484	NA	NA
UHGV-0160813_23	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0160813_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160813_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0160813_24	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-0160813_24	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0160813_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160813_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160813_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160813_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160813_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160813_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160813_25	UniRef90	UniRef90_UPI001C0FB394	phage portal protein	NA
UHGV-0160813_25	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0160813_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160813_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160813_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160813_26	UniRef90	UniRef90_UPI00156EEEC1	phage minor capsid protein	NA
UHGV-0160813_26	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0160813_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160813_26	COG	COG2369	NA	NA
UHGV-0160813_26	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0160813_27	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0160813_28	KOfam	K07584	NA	NA
UHGV-0160813_28	PHROG	phrog_4478	peptidase	other
UHGV-0160813_28	UniRef90	UniRef90_UPI00156D7F8B	ribosomal-processing cysteine protease Prp	NA
UHGV-0160813_28	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0160813_28	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0160813_28	COG	COG2868	NA	NA
UHGV-0160813_28	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0160813_29	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0160813_29	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0160813_29	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0160813_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160813_30	UniRef90	UniRef90_UPI00157128C8	phage major capsid protein	NA
UHGV-0160813_30	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0160813_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160813_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160813_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160813_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160813_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160813_31	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0160813_32	PHROG	phrog_3366	NA	unknown function
UHGV-0160813_32	eggNOG-mapper	573061.Clocel_3539	NA	NA
UHGV-0160813_32	Pfam	PF20536	NA	DUF6751
UHGV-0160813_32	Structural annotation	PF20536	NA	NA
UHGV-0160813_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160813_33	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-0160813_33	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0160813_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0160813_33	Structural annotation	PF11114	NA	NA
UHGV-0160813_34	PHROG	phrog_3266	tail completion	connector
UHGV-0160813_34	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0160813_34	Structural annotation	PF12691	NA	NA
UHGV-0160813_35	PHROG	phrog_3099	NA	unknown function
UHGV-0160813_35	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0160813_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160813_36	PHROG	phrog_11299	NA	unknown function
UHGV-0160813_36	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0160813_36	Structural annotation	PF10666	NA	NA
UHGV-0160813_37	PHROG	phrog_706	NA	unknown function
UHGV-0160813_37	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0160813_37	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0160813_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0160813_37	Structural annotation	PF06854	NA	NA
UHGV-0160813_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160813_38	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0160813_38	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0160813_38	COG	COG5412	Phage-related protein	NA
UHGV-0160813_38	Structural annotation	PF11172	NA	NA
UHGV-0160813_39	PHROG	phrog_1194	NA	unknown function
UHGV-0160813_39	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160813_40	PHROG	phrog_6616	tail protein	tail
UHGV-0160813_40	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0160813_40	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0160813_40	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0160813_40	Structural annotation	PF05113, PF02010, NF033848, NF007392, COG3500	NA	NA
UHGV-0160813_41	PHROG	phrog_16164	NA	unknown function
UHGV-0160813_41	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0160813_41	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0160813_42	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0160813_42	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0160813_42	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0160813_42	Structural annotation	PF14359	NA	NA
UHGV-0160813_43	PHROG	phrog_17147	NA	unknown function
UHGV-0160813_43	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0160813_45	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0160813_45	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0160813_45	UniRef90	UniRef90_D4J8M1	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0160813_45	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0160813_45	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0160813_45	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0160813_46	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0160813_46	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-0160813_46	eggNOG-mapper	608534.GCWU000341_02274	NA	NA
UHGV-0160813_46	Structural annotation	PF14301	NA	NA
UHGV-0160813_47	PHROG	phrog_20274	NA	unknown function
UHGV-0160813_47	UniRef90	UniRef90_UPI001D0E8670	putative ABC transporter permease	NA
UHGV-0160813_47	eggNOG-mapper	445972.ANACOL_00345	NA	NA
UHGV-0160813_47	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0160813_47	COG	COG4905	NA	NA
UHGV-0160813_47	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0160813_48	eggNOG-mapper	33035.JPJF01000043_gene997	NA	NA
UHGV-0160813_49	PHROG	phrog_937	hemolysin	other
UHGV-0160813_49	eggNOG-mapper	478749.BRYFOR_07639	NA	NA
UHGV-0160813_50	PHROG	phrog_443	holin	lysis
UHGV-0160813_50	UniRef90	UniRef90_UPI0018AA56FB	holin	NA
UHGV-0160813_50	eggNOG-mapper	397288.C806_00114	Putative lactococcus lactis phage r1t holin	NA
UHGV-0160813_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0160813_50	Structural annotation	PF16945	NA	NA
UHGV-0160813_51	PHROG	phrog_20388	endolysin	lysis
UHGV-0160813_51	UniRef90	UniRef90_A0A7X5DIH6	Phage_lysozyme2 domain-containing protein (Fragment)	NA
UHGV-0160813_51	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160813_51	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0160813_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA