UHGV-0160829

Genome information

Genome length 35,116 bps

CDS count 61

Completeness 89.01% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160829
vOTU ID	vOTU-027999
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_455466
BioSample	SAMN05971739
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.01% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.2
Jumbo phage	No

Genome content
Genome length	35,116 bps
GC content	41.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.72%
Average CDS length	534.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160829_1	UniRef90	UniRef90_A0A6N2UEL6	HTH cro/C1-type domain-containing protein	NA
UHGV-0160829_1	eggNOG-mapper	717606.PaecuDRAFT_3095	NA	NA
UHGV-0160829_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160829_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0160829_3	PHROG	phrog_21028	NA	unknown function
UHGV-0160829_3	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0160829_3	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0160829_6	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0160829_9	Structural annotation	PF16311, NF002796	NA	NA
UHGV-0160829_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160829_11	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0160829_11	Structural annotation	PF01446	NA	NA
UHGV-0160829_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0160829_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0160829_12	UniRef90	UniRef90_A0A173UM21	Ribonuclease H	NA
UHGV-0160829_12	eggNOG-mapper	1235790.C805_03782	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0160829_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0160829_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0160829_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0160829_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160829_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160829_13	UniRef90	UniRef90_A0A173UNZ4	Single-stranded DNA-binding protein	NA
UHGV-0160829_13	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-0160829_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160829_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160829_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160829_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160829_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0160829_14	PHROG	phrog_7566	NA	unknown function
UHGV-0160829_14	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0160829_15	Structural annotation	PF05641	NA	NA
UHGV-0160829_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0160829_17	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0160829_17	UniRef90	UniRef90_UPI001C0206B8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0160829_17	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0160829_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160829_17	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0160829_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160829_19	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0160829_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160829_20	PHROG	phrog_26861	NA	unknown function
UHGV-0160829_20	UniRef90	UniRef90_A0A3A9H148	Single-stranded DNA-binding protein	NA
UHGV-0160829_20	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0160829_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160829_20	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0160829_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160829_20	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0160829_21	UniRef90	UniRef90_U2RIQ6	NA	NA
UHGV-0160829_21	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0160829_23	Structural annotation	PF21715, COG4901	NA	NA
UHGV-0160829_25	UniRef90	UniRef90_R5TJQ4	Carbamoyl-phosphate synthase L chain ATP-binding protein	NA
UHGV-0160829_26	PHROG	phrog_20593	NA	unknown function
UHGV-0160829_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160829_28	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0160829_28	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0160829_28	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0160829_29	PHROG	phrog_30856	NA	unknown function
UHGV-0160829_31	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0160829_31	PHROG	phrog_11157	NA	unknown function
UHGV-0160829_31	UniRef90	UniRef90_A0A173UNA5	Bacillopeptidase F	NA
UHGV-0160829_31	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0160829_31	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0160829_31	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0160829_31	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0160829_31	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0160829_32	PHROG	phrog_32322	NA	unknown function
UHGV-0160829_32	UniRef90	UniRef90_A0A173UQD8	Ig-like_bact domain-containing protein	NA
UHGV-0160829_32	eggNOG-mapper	1256908.HMPREF0373_00675	NA	NA
UHGV-0160829_32	Pfam	PF13754	NA	Big_3_4
UHGV-0160829_32	Structural annotation	PF13754	NA	NA
UHGV-0160829_33	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0160829_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0160829_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0160829_34	UniRef90	UniRef90_U2PKP2	Terminase small subunit	NA
UHGV-0160829_34	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0160829_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160829_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0160829_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0160829_36	PHROG	phrog_1233	NA	unknown function
UHGV-0160829_36	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0160829_36	Structural annotation	PF13058	NA	NA
UHGV-0160829_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160829_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160829_37	UniRef90	UniRef90_U2RK66	Phage terminase, large subunit, PBSX family	NA
UHGV-0160829_37	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0160829_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160829_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160829_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160829_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160829_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160829_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160829_38	UniRef90	UniRef90_U2Q3Z0	Putative phage portal protein, SPP1 Gp6	NA
UHGV-0160829_38	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160829_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160829_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0160829_39	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0160829_39	UniRef90	UniRef90_U2PKN7	Phage protein F-like protein	NA
UHGV-0160829_39	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0160829_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160829_39	COG	COG2369	NA	NA
UHGV-0160829_41	UniRef90	UniRef90_UPI0013798457	ribbon-helix-helix protein, CopG family	NA
UHGV-0160829_41	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-0160829_41	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0160829_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160829_43	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0160829_43	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0160829_43	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0160829_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0160829_43	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0160829_43	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0160829_43	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0160829_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160829_44	UniRef90	UniRef90_UPI001898447E	phage scaffolding protein	NA
UHGV-0160829_44	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0160829_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160829_44	Structural annotation	PF06810	NA	NA
UHGV-0160829_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0160829_45	UniRef90	UniRef90_A0A0D0SBF1	Phage major capsid protein	NA
UHGV-0160829_45	eggNOG-mapper	1256908.HMPREF0373_00476	NA	NA
UHGV-0160829_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0160829_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0160829_46	PHROG	phrog_1236	head protein	head and packaging
UHGV-0160829_46	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0160829_46	Structural annotation	PF05135	NA	NA
UHGV-0160829_47	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0160829_47	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0160829_47	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0160829_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160829_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160829_48	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-0160829_48	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0160829_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160829_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160829_49	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0160829_49	Structural annotation	PF12691	NA	NA
UHGV-0160829_50	PHROG	phrog_885	major tail protein	tail
UHGV-0160829_50	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0160829_50	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0160829_51	PHROG	phrog_1021	NA	unknown function
UHGV-0160829_51	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0160829_52	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0160829_53	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0160829_53	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0160829_53	UniRef90	UniRef90_U2Q4W9	Phage tail tape measure protein, TP901 family	NA
UHGV-0160829_53	eggNOG-mapper	1256908.HMPREF0373_00468	Phage tail tape measure protein, TP901 family	NA
UHGV-0160829_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160829_53	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0160829_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160829_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0160829_53	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0160829_54	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160829_54	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0160829_54	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0160829_54	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0160829_55	PHROG	phrog_538	minor tail protein	tail
UHGV-0160829_55	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0160829_55	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0160829_55	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0160829_55	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0160829_56	PHROG	phrog_9994	NA	unknown function
UHGV-0160829_56	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0160829_56	Structural annotation	PF20747	NA	NA
UHGV-0160829_57	PHROG	phrog_4105	NA	unknown function
UHGV-0160829_57	eggNOG-mapper	1256908.HMPREF0373_00464	NA	NA
UHGV-0160829_58	PHROG	phrog_1129	holin	lysis
UHGV-0160829_58	UniRef90	UniRef90_U2Q4W5	Holin family protein	NA
UHGV-0160829_58	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0160829_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0160829_58	Structural annotation	PF06946	NA	NA
UHGV-0160829_59	KOfam	K07450	K07450; putative resolvase	NA
UHGV-0160829_59	PHROG	phrog_6620	transposase	integration and excision
UHGV-0160829_59	UniRef90	UniRef90_A0A3E2TAP0	IS607 family transposase	NA
UHGV-0160829_59	eggNOG-mapper	457412.RSAG_00903	protein MJ0014 - Methanococcus jannaschii gi 1590824 gb AAB97992.1 (U67460) conserved	NA
UHGV-0160829_59	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0160829_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160829_59	NCBIFam	NF033518.0	IS607 family transposase	NA
UHGV-0160829_59	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0160829_59	Structural annotation	PF00239, PF12728, NF033518, COG2452	NA	NA
UHGV-0160829_60	KOfam	K07496	K07496; putative transposase	NA
UHGV-0160829_60	PHROG	phrog_506	transposase	integration and excision
UHGV-0160829_60	UniRef90	UniRef90_A0A413SDG1	Transposase	NA
UHGV-0160829_60	eggNOG-mapper	457412.RSAG_00902	Transposase, IS605 OrfB family	NA
UHGV-0160829_60	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0160829_60	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0160829_60	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0160829_60	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0160829_60	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0160829_60	COG	COG0675	Transposase	NA
UHGV-0160829_60	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0160829_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160829_61	PHROG	phrog_670	endolysin	lysis
UHGV-0160829_61	UniRef90	UniRef90_A0A844E740	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0160829_61	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0160829_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0160829_61	Pfam	PF21540	Choline-binding repeat	Choline_bind_4
UHGV-0160829_61	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0160829_61	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA