UHGV-0160882

Genome information

Genome length 35,629 bps

CDS count 47

Completeness 58.68% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160882
vOTU ID	vOTU-027975
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_457617
BioSample	SAMN05971720
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.16
Jumbo phage	No

Genome content
Genome length	35,629 bps
GC content	59.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.73%
Average CDS length	697.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160882_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160882_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0160882_1	UniRef90	UniRef90_A0A4R3L3V9	Site-specific DNA recombinase	NA
UHGV-0160882_1	eggNOG-mapper	1128398.Curi_c13490	Resolvase, N terminal domain	NA
UHGV-0160882_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160882_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160882_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160882_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160882_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0160882_2	KOfam	K07075	NA	NA
UHGV-0160882_2	UniRef90	UniRef90_A0A3D4QXW9	Toxin-antitoxin system, antitoxin component	NA
UHGV-0160882_2	eggNOG-mapper	718252.FP2_31830	Nucleotidyltransferase substrate binding protein like	NA
UHGV-0160882_2	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-0160882_2	Pfam	PF08780	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
UHGV-0160882_2	NCBIFam	TIGR01987.1	HI0074 family nucleotidyltransferase substrate-binding subunit	NA
UHGV-0160882_2	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0160882_2	Structural annotation	PF08780, PF18765, TIGR01987, COG1669, COG2445	NA	NA
UHGV-0160882_3	PHROG	phrog_1847	NA	unknown function
UHGV-0160882_3	UniRef90	UniRef90_A0A143ZYV9	T5orf172 domain protein	NA
UHGV-0160882_3	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0160882_3	Pfam	PF13250	NA	DUF4041
UHGV-0160882_3	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0160882_3	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0160882_3	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0160882_5	PHROG	phrog_87	metallo-protease	other
UHGV-0160882_5	UniRef90	UniRef90_A0A416DGX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0160882_5	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0160882_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0160882_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160882_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160882_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160882_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160882_6	UniRef90	UniRef90_UPI00189E1B38	helix-turn-helix domain-containing protein	NA
UHGV-0160882_6	eggNOG-mapper	264732.Moth_0284	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160882_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160882_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160882_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160882_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0160882_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0160882_8	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0160882_8	UniRef90	UniRef90_A0A357AIW6	HTH cro/C1-type domain-containing protein	NA
UHGV-0160882_8	eggNOG-mapper	1382304.JNIL01000001_gene3508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160882_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160882_8	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0160882_8	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0160882_9	UniRef90	UniRef90_UPI001031040B	NA	NA
UHGV-0160882_9	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0160882_9	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0160882_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0160882_14	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160882_14	UniRef90	UniRef90_A0A837EI43	AAA_23 domain-containing protein	NA
UHGV-0160882_14	eggNOG-mapper	1178537.BA1_15609	nuclear chromosome segregation	NA
UHGV-0160882_14	Pfam	PF13476	AAA domain	AAA_23
UHGV-0160882_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0160882_14	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0160882_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0160882_15	PHROG	phrog_34753	NA	unknown function
UHGV-0160882_15	UniRef90	UniRef90_A0A5B0CQ44	Recombinase RecT	NA
UHGV-0160882_15	eggNOG-mapper	666686.B1NLA3E_01105	RecT family	NA
UHGV-0160882_15	Pfam	PF03837	RecT family	RecT
UHGV-0160882_15	Structural annotation	PF03837, NF007351	NA	NA
UHGV-0160882_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0160882_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0160882_16	UniRef90	UniRef90_A0A358Q127	MBL fold metallo-hydrolase	NA
UHGV-0160882_16	eggNOG-mapper	926561.KB900622_gene661	Metallo-beta-lactamase superfamily	NA
UHGV-0160882_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0160882_16	dbAPIS	APIS058	NA	NA
UHGV-0160882_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0160882_16	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0160882_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0160882_17	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0160882_17	eggNOG-mapper	457398.HMPREF0326_03035	NA	NA
UHGV-0160882_18	PHROG	phrog_1029	NA	unknown function
UHGV-0160882_18	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-0160882_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0160882_19	PHROG	phrog_398	NA	unknown function
UHGV-0160882_19	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0160882_19	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0160882_19	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0160882_19	Structural annotation	PF16784	NA	NA
UHGV-0160882_20	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160882_20	eggNOG-mapper	1243664.CAVL020000020_gene3196	Replication initiation and membrane attachment	NA
UHGV-0160882_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160882_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0160882_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0160882_21	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-0160882_21	eggNOG-mapper	663278.Ethha_2283	Participates in initiation and elongation during chromosome replication	NA
UHGV-0160882_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0160882_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0160882_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0160882_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0160882_24	PHROG	phrog_11237	NA	unknown function
UHGV-0160882_24	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0160882_25	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0160882_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160882_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160882_26	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-0160882_26	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0160882_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160882_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160882_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160882_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160882_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160882_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160882_27	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160882_27	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-0160882_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160882_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160882_28	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0160882_28	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0160882_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160882_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0160882_28	COG	COG2369	NA	NA
UHGV-0160882_28	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0160882_30	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0160882_30	Structural annotation	PF06810	NA	NA
UHGV-0160882_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0160882_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0160882_31	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0160882_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0160882_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160882_33	Pfam	PF20536	NA	DUF6751
UHGV-0160882_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160882_34	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0160882_35	PHROG	phrog_3266	tail completion	connector
UHGV-0160882_35	Structural annotation	PF12691	NA	NA
UHGV-0160882_37	PHROG	phrog_3099	NA	unknown function
UHGV-0160882_37	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0160882_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160882_39	PHROG	phrog_706	NA	unknown function
UHGV-0160882_39	UniRef90	UniRef90_A0A174K5P2	Bacteriophage Gp15 protein	NA
UHGV-0160882_39	eggNOG-mapper	411471.SUBVAR_06986	Bacteriophage Gp15 protein	NA
UHGV-0160882_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0160882_39	Structural annotation	PF06854	NA	NA
UHGV-0160882_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0160882_40	eggNOG-mapper	1347392.CCEZ01000015_gene2830	tape measure	NA
UHGV-0160882_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0160882_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0160882_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160882_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0160882_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160882_41	UniRef90	UniRef90_UPI00164AD3F2	phage tail family protein	NA
UHGV-0160882_41	eggNOG-mapper	755731.Clo1100_3575	Phage tail protein	NA
UHGV-0160882_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0160882_41	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0160882_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0160882_42	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0160882_42	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0160882_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0160882_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0160882_43	PHROG	phrog_1220	head protein	head and packaging
UHGV-0160882_43	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0160882_43	Structural annotation	PF20747	NA	NA
UHGV-0160882_44	COG	COG3291	NA	NA
UHGV-0160882_44	Structural annotation	PF21722, PF13895, MF_04116, NF033814	NA	NA
UHGV-0160882_46	PHROG	phrog_30034	NA	unknown function
UHGV-0160882_46	UniRef90	UniRef90_R5QX84	Carbohydrate binding domain protein	NA
UHGV-0160882_46	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0160882_46	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0160882_46	Structural annotation	PF14600	NA	NA