UHGV-0160954

Genome information

Genome length 30,964 bps

CDS count 46

Completeness 80.79% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160954
vOTU ID	vOTU-022222
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_462550
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.12
Jumbo phage	No

Genome content
Genome length	30,964 bps
GC content	49.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.30%
Average CDS length	618.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160954_1	KOfam	K14059	int; integrase	NA
UHGV-0160954_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0160954_1	UniRef90	UniRef90_UPI000D0ECE9F	site-specific integrase	NA
UHGV-0160954_1	eggNOG-mapper	411471.SUBVAR_04379	Belongs to the 'phage' integrase family	NA
UHGV-0160954_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0160954_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160954_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160954_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0160954_2	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0160954_2	UniRef90	UniRef90_A0A415L489	NA	NA
UHGV-0160954_2	eggNOG-mapper	1449050.JNLE01000005_gene4075	NA	NA
UHGV-0160954_2	Pfam	PF12978	NA	DUF3862
UHGV-0160954_2	Structural annotation	PF12978, PF10571, MF_00925, NF008423, COG2913	NA	NA
UHGV-0160954_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160954_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160954_4	UniRef90	UniRef90_UPI000BA393F7	helix-turn-helix domain-containing protein	NA
UHGV-0160954_4	eggNOG-mapper	290402.Cbei_2265	Helix-turn-helix domain protein	NA
UHGV-0160954_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160954_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160954_5	UniRef90	UniRef90_A0A6B4SGD7	NA	NA
UHGV-0160954_5	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0160954_5	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0160954_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0160954_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160954_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0160954_9	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-0160954_9	eggNOG-mapper	1414720.CBYM010000005_gene1349	Phage antirepressor protein KilAC domain	NA
UHGV-0160954_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0160954_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160954_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0160954_9	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0160954_10	PHROG	phrog_6058	NA	unknown function
UHGV-0160954_10	UniRef90	UniRef90_UPI000D0EB5B4	DNA-binding protein	NA
UHGV-0160954_10	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-0160954_10	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0160954_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160954_13	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-0160954_13	eggNOG-mapper	696369.KI912183_gene1572	PFAM helix-turn-helix	NA
UHGV-0160954_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160954_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160954_13	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160954_14	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0160954_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0160954_14	UniRef90	UniRef90_A0A316L965	DNA methylase N-4	NA
UHGV-0160954_14	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0160954_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0160954_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0160954_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0160954_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0160954_14	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0160954_15	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0160954_15	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0160954_15	UniRef90	UniRef90_A0A358WYE5	Beta sliding clamp	NA
UHGV-0160954_15	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0160954_15	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0160954_15	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0160954_15	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0160954_15	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0160954_15	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0160954_15	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0160954_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160954_17	UniRef90	UniRef90_D3LVI6	Siphovirus Gp157	NA
UHGV-0160954_17	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0160954_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160954_17	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0160954_18	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160954_18	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0160954_18	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0160954_18	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0160954_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160954_20	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0160954_20	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0160954_21	PHROG	phrog_7566	NA	unknown function
UHGV-0160954_21	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0160954_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160954_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160954_23	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0160954_23	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0160954_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160954_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160954_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160954_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160954_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0160954_24	PHROG	phrog_2113	NA	unknown function
UHGV-0160954_24	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-0160954_24	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-0160954_24	Structural annotation	PF21715	NA	NA
UHGV-0160954_25	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160954_25	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-0160954_25	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0160954_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160954_25	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0160954_26	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0160954_26	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0160954_26	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0160954_26	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0160954_26	Pfam	PF00692	dUTPase	dUTPase
UHGV-0160954_26	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0160954_26	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0160954_26	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0160954_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0160954_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160954_28	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0160954_28	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0160954_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0160954_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160954_29	eggNOG-mapper	1095750.HMPREF9970_0179	NA	NA
UHGV-0160954_29	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0160954_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0160954_30	PHROG	phrog_17390	NA	unknown function
UHGV-0160954_30	UniRef90	UniRef90_UPI001E61FF52	terminase small subunit	NA
UHGV-0160954_30	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-0160954_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160954_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0160954_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160954_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160954_31	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0160954_31	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0160954_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160954_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160954_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160954_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160954_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160954_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160954_32	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0160954_32	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160954_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160954_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0160954_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0160954_33	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-0160954_33	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0160954_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160954_33	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0160954_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0160954_33	COG	COG2369	NA	NA
UHGV-0160954_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160954_35	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-0160954_35	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-0160954_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160954_36	PHROG	phrog_283	major head protein	head and packaging
UHGV-0160954_36	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0160954_36	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0160954_36	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0160954_36	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0160954_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0160954_37	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-0160954_37	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-0160954_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0160954_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160954_39	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-0160954_39	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0160954_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160954_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0160954_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160954_40	Structural annotation	PF05657	NA	NA
UHGV-0160954_41	PHROG	phrog_158	major tail protein	tail
UHGV-0160954_41	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0160954_41	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0160954_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0160954_42	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0160954_42	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-0160954_42	Structural annotation	PF19591	NA	NA
UHGV-0160954_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160954_43	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0160954_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160954_44	PHROG	phrog_23726	NA	unknown function
UHGV-0160954_44	UniRef90	UniRef90_A0A0M1UTM9	Cell surface domain protein	NA
UHGV-0160954_44	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-0160954_44	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0160954_45	PHROG	phrog_1194	NA	unknown function
UHGV-0160954_45	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-0160954_45	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0160954_45	Pfam	PF20458	NA	DUF6711
UHGV-0160954_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160954_46	PHROG	phrog_6616	tail protein	tail
UHGV-0160954_46	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0160954_46	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-0160954_46	COG	COG4926	Phage-related protein	NA
UHGV-0160954_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA