UHGV-0161049

Genome information

Genome length 34,010 bps

CDS count 57

Completeness 94.68% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161049
vOTU ID	vOTU-008594
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479772
BioSample	SAMN06115521
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.68% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.31
Jumbo phage	No

Genome content
Genome length	34,010 bps
GC content	61.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.59%
Average CDS length	544.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161049_3	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0161049_3	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0161049_4	UniRef90	UniRef90_A0A1Y3X1Z8	Sigma70_r4 domain-containing protein	NA
UHGV-0161049_4	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0161049_4	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0161049_4	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0161049_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0161049_4	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA
UHGV-0161049_8	eggNOG-mapper	742733.HMPREF9469_05008	NA	NA
UHGV-0161049_9	PHROG	phrog_13589	NA	unknown function
UHGV-0161049_9	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0161049_11	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0161049_13	PHROG	phrog_32744	NA	unknown function
UHGV-0161049_13	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0161049_13	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0161049_15	PHROG	phrog_23464	NA	unknown function
UHGV-0161049_15	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0161049_15	COG	COG5412	Phage-related protein	NA
UHGV-0161049_15	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0161049_17	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0161049_18	PHROG	phrog_88	major tail protein	tail
UHGV-0161049_18	UniRef90	UniRef90_A0A3A9SPP2	Phage tail protein	NA
UHGV-0161049_18	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0161049_18	COG	COG5492	NA	NA
UHGV-0161049_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0161049_19	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0161049_19	Structural annotation	TIGR01725	NA	NA
UHGV-0161049_20	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0161049_21	PHROG	phrog_19734	NA	unknown function
UHGV-0161049_21	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0161049_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0161049_22	PHROG	phrog_2550	NA	unknown function
UHGV-0161049_22	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0161049_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0161049_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0161049_23	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0161049_23	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0161049_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161049_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0161049_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161049_24	KOfam	K06904	NA	NA
UHGV-0161049_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0161049_24	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-0161049_24	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0161049_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0161049_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0161049_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0161049_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0161049_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0161049_25	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0161049_25	eggNOG-mapper	396034.A6XMJ5_9CAUD	Phage portal protein	NA
UHGV-0161049_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0161049_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0161049_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0161049_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0161049_26	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0161049_26	eggNOG-mapper	491915.Aflv_0661	Phage Terminase	NA
UHGV-0161049_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0161049_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0161049_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161049_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0161049_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0161049_28	Structural annotation	NF041588	NA	NA
UHGV-0161049_30	UniRef90	UniRef90_A0A7X4ZJI5	Conjugal transfer protein	NA
UHGV-0161049_30	eggNOG-mapper	1321784.HMPREF1987_01548	Cysteine-rich KTR	NA
UHGV-0161049_30	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0161049_30	Structural annotation	PF14205	NA	NA
UHGV-0161049_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161049_31	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0161049_31	Structural annotation	PF21578	NA	NA
UHGV-0161049_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0161049_36	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0161049_36	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0161049_36	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0161049_37	Pfam	PF04448	NA	DUF551
UHGV-0161049_37	Structural annotation	NF041588	NA	NA
UHGV-0161049_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0161049_39	PHROG	phrog_27290	NA	unknown function
UHGV-0161049_39	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0161049_39	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0161049_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0161049_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0161049_39	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0161049_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0161049_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0161049_40	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0161049_40	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0161049_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0161049_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0161049_40	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0161049_41	PHROG	phrog_27610	NA	unknown function
UHGV-0161049_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0161049_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0161049_42	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0161049_42	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0161049_42	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0161049_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0161049_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0161049_42	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0161049_43	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161049_43	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-0161049_43	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0161049_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0161049_43	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0161049_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0161049_45	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0161049_45	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161049_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0161049_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0161049_45	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0161049_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161049_46	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0161049_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161049_47	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0161049_47	UniRef90	UniRef90_A0A1Y4BNF1	HTH cro/C1-type domain-containing protein	NA
UHGV-0161049_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161049_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161049_48	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161049_48	UniRef90	UniRef90_A0A3E3JY69	NA	NA
UHGV-0161049_48	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0161049_49	PHROG	phrog_14088	NA	unknown function
UHGV-0161049_49	UniRef90	UniRef90_UPI001D07CB3C	carboxypeptidase	NA
UHGV-0161049_49	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0161049_50	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0161049_53	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0161049_53	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0161049_53	UniRef90	UniRef90_UPI001EDD8750	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0161049_53	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0161049_53	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0161049_53	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0161049_53	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0161049_54	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0161049_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0161049_54	UniRef90	UniRef90_UPI001D080AA6	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0161049_54	eggNOG-mapper	1514668.JOOA01000001_gene180	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0161049_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0161049_54	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0161049_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0161049_56	KOfam	K14059	int; integrase	NA
UHGV-0161049_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0161049_56	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0161049_56	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0161049_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161049_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161049_56	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0161049_57	eggNOG-mapper	693746.OBV_41910	NA	NA