UHGV-0161119

Genome information

Genome length 42,410 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161119
vOTU ID	vOTU-046301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464176
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.98
Jumbo phage	No

Genome content
Genome length	42,410 bps
GC content	36.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.96%
Average CDS length	545.45 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161119_4	PHROG	phrog_18444	NA	unknown function
UHGV-0161119_5	PHROG	phrog_6616	tail protein	tail
UHGV-0161119_5	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0161119_5	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0161119_5	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0161119_6	PHROG	phrog_1194	NA	unknown function
UHGV-0161119_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0161119_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161119_7	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0161119_7	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0161119_7	COG	COG5412	Phage-related protein	NA
UHGV-0161119_7	Structural annotation	PF11172	NA	NA
UHGV-0161119_8	PHROG	phrog_706	NA	unknown function
UHGV-0161119_8	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0161119_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0161119_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161119_8	Structural annotation	PF06854	NA	NA
UHGV-0161119_9	PHROG	phrog_11299	NA	unknown function
UHGV-0161119_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0161119_9	Structural annotation	PF10666	NA	NA
UHGV-0161119_10	PHROG	phrog_3099	NA	unknown function
UHGV-0161119_10	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0161119_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161119_11	PHROG	phrog_3266	tail completion	connector
UHGV-0161119_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0161119_11	Structural annotation	PF12691	NA	NA
UHGV-0161119_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161119_12	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0161119_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0161119_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161119_12	Structural annotation	PF11114	NA	NA
UHGV-0161119_13	PHROG	phrog_3366	NA	unknown function
UHGV-0161119_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0161119_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0161119_14	PHROG	phrog_1233	NA	unknown function
UHGV-0161119_14	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0161119_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161119_15	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0161119_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0161119_16	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0161119_16	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0161119_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0161119_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0161119_18	PHROG	phrog_419	NA	unknown function
UHGV-0161119_18	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0161119_18	Structural annotation	PF14083	NA	NA
UHGV-0161119_19	PHROG	phrog_1048	NA	unknown function
UHGV-0161119_19	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0161119_20	PHROG	phrog_918	NA	unknown function
UHGV-0161119_20	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0161119_20	eggNOG-mapper	1225795.K4I1W7_9CAUD	NA	NA
UHGV-0161119_20	Pfam	PF19791	NA	DUF6275
UHGV-0161119_20	Structural annotation	PF19791	NA	NA
UHGV-0161119_21	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0161119_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161119_22	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0161119_22	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0161119_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161119_22	COG	COG2369	NA	NA
UHGV-0161119_22	Structural annotation	PF06152	NA	NA
UHGV-0161119_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161119_23	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0161119_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0161119_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161119_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161119_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0161119_25	UniRef90	UniRef90_UPI00156DBE69	PBSX family phage terminase large subunit	NA
UHGV-0161119_25	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0161119_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0161119_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0161119_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161119_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161119_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161119_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0161119_26	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0161119_26	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0161119_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0161119_26	Structural annotation	PF16677	NA	NA
UHGV-0161119_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161119_28	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0161119_28	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0161119_28	Pfam	PF00847	AP2 domain	AP2
UHGV-0161119_28	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0161119_30	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0161119_30	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0161119_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0161119_30	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0161119_34	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161119_34	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0161119_34	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0161119_34	Pfam	PF00847	AP2 domain	AP2
UHGV-0161119_34	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0161119_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161119_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161119_37	UniRef90	UniRef90_UPI000E4D7A26	helix-turn-helix domain-containing protein	NA
UHGV-0161119_37	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161119_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0161119_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161119_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161119_39	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0161119_41	Structural annotation	PF14844	NA	NA
UHGV-0161119_43	Structural annotation	PF14084	NA	NA
UHGV-0161119_44	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0161119_47	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0161119_47	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0161119_47	UniRef90	UniRef90_A0A417V5I1	Adenylyl-sulfate reductase	NA
UHGV-0161119_47	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0161119_47	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0161119_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0161119_47	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0161119_47	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0161119_50	eggNOG-mapper	1408438.JADD01000021_gene397	NA	NA
UHGV-0161119_52	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0161119_52	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0161119_52	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0161119_52	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0161119_53	PHROG	phrog_1123	NA	unknown function
UHGV-0161119_53	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0161119_53	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0161119_53	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0161119_54	PHROG	phrog_16304	NA	unknown function
UHGV-0161119_54	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0161119_54	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0161119_55	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0161119_55	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161119_55	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0161119_55	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0161119_55	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0161119_55	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0161119_56	PHROG	phrog_7566	NA	unknown function
UHGV-0161119_56	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0161119_56	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0161119_57	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0161119_57	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0161119_57	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0161119_57	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0161119_58	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161119_58	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0161119_58	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0161119_58	Pfam	PF04404	ERF superfamily	ERF
UHGV-0161119_58	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0161119_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0161119_59	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0161119_59	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0161119_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0161119_59	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0161119_63	PHROG	phrog_36464	NA	unknown function
UHGV-0161119_63	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0161119_63	Structural annotation	PF09035	NA	NA
UHGV-0161119_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161119_65	UniRef90	UniRef90_UPI00156EC996	helix-turn-helix domain-containing protein	NA
UHGV-0161119_65	eggNOG-mapper	1201292.DR75_1541	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161119_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161119_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161119_65	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0161119_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161119_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161119_66	UniRef90	UniRef90_UPI001570EBDA	helix-turn-helix transcriptional regulator	NA
UHGV-0161119_66	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0161119_66	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161119_66	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0161119_67	PHROG	phrog_87	metallo-protease	other
UHGV-0161119_67	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0161119_67	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0161119_67	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161119_67	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0161119_67	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0161119_68	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0161119_68	COG	COG4640	NA	NA
UHGV-0161119_69	KOfam	K14059	int; integrase	NA
UHGV-0161119_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0161119_69	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0161119_69	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0161119_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161119_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161119_69	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0161119_70	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0161119_70	PHROG	phrog_670	endolysin	lysis
UHGV-0161119_70	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0161119_70	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0161119_70	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0161119_70	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0161119_70	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0161119_70	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0161119_71	PHROG	phrog_962	holin	lysis
UHGV-0161119_71	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0161119_71	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0161119_71	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0161119_71	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0161119_71	COG	COG5546	NA	NA
UHGV-0161119_71	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA