UHGV-0161147

Genome information

Genome length 38,076 bps

CDS count 55

Completeness 83.08% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161147
vOTU ID	vOTU-022226
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464543
BioSample	SAMN06112056
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49
Jumbo phage	No

Genome content
Genome length	38,076 bps
GC content	48.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.91%
Average CDS length	653.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161147_2	UniRef90	UniRef90_A0A349YP35	BclA_C domain-containing protein	NA
UHGV-0161147_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0161147_3	PHROG	phrog_16490	NA	unknown function
UHGV-0161147_3	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0161147_4	PHROG	phrog_21718	NA	unknown function
UHGV-0161147_5	PHROG	phrog_3512	sigma factor	transcription regulation
UHGV-0161147_5	UniRef90	UniRef90_A0A1Q6R3V1	Sigma70_r4 domain-containing protein	NA
UHGV-0161147_5	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0161147_5	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0161147_7	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0161147_7	PHROG	phrog_894	endolysin	lysis
UHGV-0161147_7	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0161147_7	eggNOG-mapper	696369.KI912183_gene1840	Peptidase M15A	NA
UHGV-0161147_7	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0161147_7	COG	COG3108	NA	NA
UHGV-0161147_7	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0161147_8	PHROG	phrog_199	holin	lysis
UHGV-0161147_8	UniRef90	UniRef90_R6X5E0	Holin domain protein	NA
UHGV-0161147_8	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0161147_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161147_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161147_9	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0161147_9	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0161147_9	eggNOG-mapper	1504672.669782887	NA	NA
UHGV-0161147_9	Pfam	PF14301	NA	DUF4376
UHGV-0161147_9	Structural annotation	PF14301	NA	NA
UHGV-0161147_10	Structural annotation	PF08948	NA	NA
UHGV-0161147_11	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0161147_12	PHROG	phrog_5717	tail protein	tail
UHGV-0161147_12	eggNOG-mapper	1123288.SOV_2c10820	Phage Tail Collar Domain	NA
UHGV-0161147_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0161147_12	Structural annotation	COG4675	NA	NA
UHGV-0161147_13	PHROG	phrog_587	structural protein	head and packaging
UHGV-0161147_13	UniRef90	UniRef90_UPI000CF9BD62	NA	NA
UHGV-0161147_13	eggNOG-mapper	1211817.CCAT010000003_gene216	NA	NA
UHGV-0161147_13	Pfam	PF11041	NA	DUF2612
UHGV-0161147_13	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0161147_14	PHROG	phrog_6	baseplate protein	tail
UHGV-0161147_14	UniRef90	UniRef90_A0A1Q6RAC9	Baseplate_J domain-containing protein	NA
UHGV-0161147_14	eggNOG-mapper	1123288.SOV_2c10800	Baseplate J-like protein	NA
UHGV-0161147_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0161147_14	COG	COG3299	NA	NA
UHGV-0161147_14	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0161147_15	PHROG	phrog_120	baseplate protein	tail
UHGV-0161147_15	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-0161147_15	eggNOG-mapper	1123288.SOV_2c10790	NA	NA
UHGV-0161147_15	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0161147_16	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0161147_16	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0161147_16	eggNOG-mapper	927704.SELR_16680	PAAR repeat-containing protein	NA
UHGV-0161147_16	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0161147_16	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0161147_16	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0161147_17	UniRef90	UniRef90_A0A1Q6RAF4	Gp138_N domain-containing protein	NA
UHGV-0161147_17	eggNOG-mapper	1415774.U728_3735	Baseplate assembly protein	NA
UHGV-0161147_17	Pfam	PF18352	NA	Gp138_N
UHGV-0161147_17	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0161147_17	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0161147_18	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0161147_18	UniRef90	UniRef90_A0A0U1KW78	NA	NA
UHGV-0161147_18	eggNOG-mapper	1123288.SOV_2c10770	NA	NA
UHGV-0161147_18	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0161147_19	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0161147_19	UniRef90	UniRef90_U2HCN2	Putative bacteriophage protein	NA
UHGV-0161147_19	eggNOG-mapper	936573.HMPREF1147_1342	NA	NA
UHGV-0161147_20	PHROG	phrog_817	tail fiber protein	tail
UHGV-0161147_20	UniRef90	UniRef90_UPI0018EE58A4	fibronectin type III domain-containing protein	NA
UHGV-0161147_20	eggNOG-mapper	1123288.SOV_2c10750	NA	NA
UHGV-0161147_20	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0161147_20	Structural annotation	PF21821, TIGR01633, COG4722	NA	NA
UHGV-0161147_21	PHROG	phrog_22539	NA	unknown function
UHGV-0161147_21	UniRef90	UniRef90_A0A1Q6RAF2	Phage_lysozyme2 domain-containing protein	NA
UHGV-0161147_21	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0161147_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0161147_21	Structural annotation	PF18013, COG4764	NA	NA
UHGV-0161147_22	PHROG	phrog_4364	NA	unknown function
UHGV-0161147_22	UniRef90	UniRef90_UPI001C39E5BE	4-alpha-glucanotransferase	NA
UHGV-0161147_22	eggNOG-mapper	936573.HMPREF1147_1339	NA	NA
UHGV-0161147_23	eggNOG-mapper	1196322.A370_02023	NA	NA
UHGV-0161147_23	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0161147_23	Structural annotation	PF21822	NA	NA
UHGV-0161147_24	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0161147_24	UniRef90	UniRef90_A0A412CGT4	NA	NA
UHGV-0161147_24	eggNOG-mapper	1123288.SOV_2c10710	NA	NA
UHGV-0161147_24	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0161147_24	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0161147_25	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0161147_25	UniRef90	UniRef90_UPI000CF84C55	NA	NA
UHGV-0161147_25	eggNOG-mapper	1211817.CCAT010000003_gene227	NA	NA
UHGV-0161147_25	Pfam	PF11863	NA	DUF3383
UHGV-0161147_25	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0161147_26	PHROG	phrog_1973	NA	unknown function
UHGV-0161147_26	eggNOG-mapper	864563.HMPREF9166_1247	NA	NA
UHGV-0161147_26	Structural annotation	PF16724	NA	NA
UHGV-0161147_27	PHROG	phrog_939	head protein	head and packaging
UHGV-0161147_27	eggNOG-mapper	1123288.SOV_2c10670	NA	NA
UHGV-0161147_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0161147_28	PHROG	phrog_222	tail protein	tail
UHGV-0161147_28	UniRef90	UniRef90_C9LU87	Putative bacteriophage protein	NA
UHGV-0161147_28	eggNOG-mapper	1123288.SOV_2c10660	NA	NA
UHGV-0161147_29	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0161147_29	UniRef90	UniRef90_A0A354WRG8	NA	NA
UHGV-0161147_29	eggNOG-mapper	546271.Selsp_1329	NA	NA
UHGV-0161147_29	Pfam	PF13262	NA	DUF4054
UHGV-0161147_29	Structural annotation	PF13262	NA	NA
UHGV-0161147_31	PHROG	phrog_264	major head protein	head and packaging
UHGV-0161147_31	UniRef90	UniRef90_UPI00190EF81E	NA	NA
UHGV-0161147_31	eggNOG-mapper	1415774.U728_3749	NA	NA
UHGV-0161147_31	Pfam	PF09950	NA	DUF2184
UHGV-0161147_31	COG	COG4834	NA	NA
UHGV-0161147_31	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0161147_32	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0161147_32	UniRef90	UniRef90_A0A0U1KXM2	Putative bacteriophage protein	NA
UHGV-0161147_32	eggNOG-mapper	1415774.U728_3750	NA	NA
UHGV-0161147_32	Structural annotation	PF09956	NA	NA
UHGV-0161147_33	KOfam	K09960	NA	NA
UHGV-0161147_33	PHROG	phrog_16985	NA	unknown function
UHGV-0161147_33	UniRef90	UniRef90_UPI000CF9DD55	NA	NA
UHGV-0161147_33	eggNOG-mapper	1123288.SOV_2c10610	NA	NA
UHGV-0161147_33	Pfam	PF09979	NA	DUF2213
UHGV-0161147_33	COG	COG3566	NA	NA
UHGV-0161147_33	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0161147_34	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0161147_34	UniRef90	UniRef90_A0A1Q6RAG2	Phage_Mu_F domain-containing protein	NA
UHGV-0161147_34	eggNOG-mapper	1211817.CCAT010000003_gene238	Phage Mu protein F like protein	NA
UHGV-0161147_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0161147_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0161147_34	COG	COG2369	NA	NA
UHGV-0161147_34	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0161147_37	KOfam	K09961	NA	NA
UHGV-0161147_37	PHROG	phrog_146	portal protein	head and packaging
UHGV-0161147_37	UniRef90	UniRef90_UPI000CF8744B	NA	NA
UHGV-0161147_37	eggNOG-mapper	936573.HMPREF1147_1323	NA	NA
UHGV-0161147_37	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0161147_37	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0161147_37	COG	COG3567	NA	NA
UHGV-0161147_37	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0161147_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161147_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0161147_38	UniRef90	UniRef90_A0A1Q6RAF0	Terminase	NA
UHGV-0161147_38	eggNOG-mapper	1123288.SOV_2c10550	Terminase-like family	NA
UHGV-0161147_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161147_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161147_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161147_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161147_39	PHROG	phrog_2412	NA	unknown function
UHGV-0161147_39	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0161147_39	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0161147_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0161147_40	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0161147_40	UniRef90	UniRef90_A0A1Q6RAE5	Methyltransferase	NA
UHGV-0161147_40	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0161147_40	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0161147_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0161147_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0161147_40	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0161147_43	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0161147_43	PHROG	phrog_16625	NA	unknown function
UHGV-0161147_43	UniRef90	UniRef90_A0A645CFN4	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0161147_43	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-0161147_43	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0161147_43	COG	COG2369	NA	NA
UHGV-0161147_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0161147_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0161147_47	UniRef90	UniRef90_A0A1Q6RAH0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0161147_47	eggNOG-mapper	203119.Cthe_1728	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0161147_47	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0161147_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161147_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0161147_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161147_47	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0161147_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161147_48	UniRef90	UniRef90_A0A849CSI6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0161147_48	eggNOG-mapper	1262914.BN533_00791	DNA-templated transcription, initiation	NA
UHGV-0161147_48	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0161147_48	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0161147_50	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161147_50	UniRef90	UniRef90_A0A0B5A5Y0	VRR-NUC domain-containing protein	NA
UHGV-0161147_50	eggNOG-mapper	1589270.A0A0B5A5Y0_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0161147_50	Structural annotation	PF04471, MF_00130, NF002582, COG3331	NA	NA
UHGV-0161147_51	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0161147_51	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0161147_51	UniRef90	UniRef90_A0A1G6K8K7	Type III restriction enzyme, res subunit	NA
UHGV-0161147_51	eggNOG-mapper	568816.Acin_1846	helicase superfamily c-terminal domain	NA
UHGV-0161147_51	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0161147_51	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0161147_51	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0161147_51	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0161147_51	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0161147_51	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0161147_55	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0161147_55	UniRef90	UniRef90_A0A8I2BCP8	NA	NA
UHGV-0161147_55	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-0161147_55	Pfam	PF06048	NA	DUF927
UHGV-0161147_55	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0161147_55	COG	COG5519	NA	NA