UHGV-0161148

Genome information

vOTU vOTU-061934

Genome length 42,705 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161148
vOTU ID	vOTU-061934
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464507
BioSample	SAMN06112056
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.3
Jumbo phage	No

Genome content
Genome length	42,705 bps
GC content	53.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.43%
Average CDS length	511.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161148_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0161148_2	PHROG	phrog_28802	NA	unknown function
UHGV-0161148_2	Structural annotation	PF12510	NA	NA
UHGV-0161148_3	PHROG	phrog_20016	NA	unknown function
UHGV-0161148_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0161148_3	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0161148_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0161148_4	PHROG	phrog_16490	NA	unknown function
UHGV-0161148_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0161148_5	PHROG	phrog_22984	NA	unknown function
UHGV-0161148_6	PHROG	phrog_21718	NA	unknown function
UHGV-0161148_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0161148_7	PHROG	phrog_3754	NA	unknown function
UHGV-0161148_7	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0161148_9	PHROG	phrog_435	endolysin	lysis
UHGV-0161148_9	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0161148_9	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0161148_9	Pfam	PF05036	SPOR domain	SPOR
UHGV-0161148_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0161148_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0161148_10	PHROG	phrog_1129	holin	lysis
UHGV-0161148_10	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0161148_10	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0161148_10	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0161148_10	Structural annotation	PF06946	NA	NA
UHGV-0161148_11	PHROG	phrog_4105	NA	unknown function
UHGV-0161148_11	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0161148_11	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0161148_13	KOfam	K23533	LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein	NA
UHGV-0161148_13	PHROG	phrog_35892	NA	unknown function
UHGV-0161148_13	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0161148_13	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0161148_13	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0161148_14	Structural annotation	PF08481, NF033814, COG2372	NA	NA
UHGV-0161148_16	PHROG	phrog_2310	NA	unknown function
UHGV-0161148_16	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0161148_19	PHROG	phrog_2295	NA	unknown function
UHGV-0161148_19	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0161148_19	Structural annotation	PF21722	NA	NA
UHGV-0161148_21	PHROG	phrog_18725	NA	unknown function
UHGV-0161148_21	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0161148_21	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0161148_21	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0161148_22	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0161148_22	PHROG	phrog_11157	NA	unknown function
UHGV-0161148_22	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0161148_22	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0161148_22	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0161148_22	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0161148_22	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0161148_22	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0161148_24	PHROG	phrog_13879	NA	unknown function
UHGV-0161148_24	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0161148_24	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0161148_25	PHROG	phrog_1194	NA	unknown function
UHGV-0161148_25	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0161148_25	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0161148_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161148_26	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0161148_26	COG	COG1511	NA	NA
UHGV-0161148_26	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0161148_27	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0161148_27	PHROG	phrog_19856	NA	unknown function
UHGV-0161148_27	UniRef90	UniRef90_A0A417P7U8	Restriction endonuclease	NA
UHGV-0161148_27	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0161148_27	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0161148_27	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0161148_27	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0161148_27	Structural annotation	PF04471, MF_00584, NF040854, COG1787	NA	NA
UHGV-0161148_28	PHROG	phrog_706	NA	unknown function
UHGV-0161148_28	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0161148_28	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0161148_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161148_28	Structural annotation	PF06854	NA	NA
UHGV-0161148_29	PHROG	phrog_11299	NA	unknown function
UHGV-0161148_29	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0161148_29	Structural annotation	PF10666	NA	NA
UHGV-0161148_30	PHROG	phrog_3099	NA	unknown function
UHGV-0161148_30	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0161148_30	Structural annotation	TIGR02126	NA	NA
UHGV-0161148_31	PHROG	phrog_3266	tail completion	connector
UHGV-0161148_31	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0161148_31	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0161148_31	Structural annotation	PF12691	NA	NA
UHGV-0161148_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161148_32	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0161148_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0161148_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161148_32	Structural annotation	PF11114	NA	NA
UHGV-0161148_33	PHROG	phrog_3366	NA	unknown function
UHGV-0161148_33	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0161148_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0161148_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161148_34	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0161148_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-0161148_35	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0161148_35	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0161148_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0161148_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161148_36	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0161148_36	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0161148_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161148_36	Structural annotation	PF06810	NA	NA
UHGV-0161148_37	Structural annotation	PF18152	NA	NA
UHGV-0161148_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161148_38	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0161148_38	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0161148_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161148_38	COG	COG2369	NA	NA
UHGV-0161148_38	Structural annotation	PF06152	NA	NA
UHGV-0161148_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161148_40	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0161148_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0161148_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0161148_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161148_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161148_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0161148_41	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0161148_41	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0161148_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0161148_41	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0161148_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161148_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161148_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161148_42	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0161148_42	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0161148_42	Structural annotation	PF13542	NA	NA
UHGV-0161148_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161148_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161148_43	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0161148_43	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0161148_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161148_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161148_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161148_44	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0161148_48	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0161148_48	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0161148_48	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0161148_48	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0161148_48	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0161148_48	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0161148_48	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0161148_49	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0161148_49	UniRef90	UniRef90_D4K5C7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0161148_49	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0161148_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161148_49	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161148_50	eggNOG-mapper	1232443.BAIA02000103_gene2903	NA	NA
UHGV-0161148_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0161148_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0161148_52	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0161148_52	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0161148_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0161148_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0161148_52	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0161148_53	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161148_53	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0161148_53	eggNOG-mapper	553220.CAMGR0001_2115	NA	NA
UHGV-0161148_53	Pfam	PF06356	NA	DUF1064
UHGV-0161148_53	Structural annotation	PF06356	NA	NA
UHGV-0161148_55	PHROG	phrog_15768	NA	unknown function
UHGV-0161148_55	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0161148_55	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0161148_55	Pfam	PF19808	NA	DUF6291
UHGV-0161148_55	Structural annotation	PF19808	NA	NA
UHGV-0161148_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161148_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161148_56	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0161148_56	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0161148_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161148_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0161148_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161148_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0161148_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0161148_57	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0161148_58	PHROG	phrog_7566	NA	unknown function
UHGV-0161148_58	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0161148_58	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0161148_59	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0161148_59	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0161148_59	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0161148_59	Structural annotation	PF05772	NA	NA
UHGV-0161148_60	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161148_60	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0161148_60	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0161148_60	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0161148_61	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0161148_61	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0161148_61	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0161148_61	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0161148_61	Structural annotation	PF05565	NA	NA
UHGV-0161148_63	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0161148_63	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0161148_63	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0161148_64	PHROG	phrog_4433	NA	unknown function
UHGV-0161148_64	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0161148_64	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0161148_64	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0161148_66	PHROG	phrog_22529	NA	unknown function
UHGV-0161148_66	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0161148_66	eggNOG-mapper	742733.HMPREF9469_00853	3D domain	NA
UHGV-0161148_66	Pfam	PF06725	3D domain	3D
UHGV-0161148_66	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0161148_66	Structural annotation	COG3584	NA	NA
UHGV-0161148_70	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161148_70	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161148_70	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0161148_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161148_70	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0161148_70	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161148_71	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0161148_71	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161148_75	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0161148_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161148_75	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0161148_76	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0161148_76	PHROG	phrog_95	integrase	integration and excision
UHGV-0161148_76	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0161148_76	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0161148_76	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0161148_76	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0161148_76	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0161148_76	Structural annotation	PF00239, NF041201, COG1961	NA	NA