UHGV-0161224

Genome information

Genome length 35,044 bps

CDS count 67

Completeness 61.32% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161224
vOTU ID	vOTU-028026
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490622
BioSample	SAMN06110364
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.47
Jumbo phage	No

Genome content
Genome length	35,044 bps
GC content	36.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.58%
Average CDS length	466.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161224_1	UniRef90	UniRef90_R5EG59	Cation diffusion facilitator family transporter	NA
UHGV-0161224_1	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0161224_1	COG	COG5412	Phage-related protein	NA
UHGV-0161224_2	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0161224_2	Pfam	PF16729	NA	DUF5067
UHGV-0161224_2	Structural annotation	PF16729, TIGR04087, COG3353	NA	NA
UHGV-0161224_3	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0161224_4	PHROG	phrog_1194	NA	unknown function
UHGV-0161224_4	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0161224_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0161224_5	PHROG	phrog_1401	NA	unknown function
UHGV-0161224_5	Structural annotation	PF07761	NA	NA
UHGV-0161224_6	PHROG	phrog_16267	NA	unknown function
UHGV-0161224_6	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0161224_6	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0161224_6	COG	COG4926	Phage-related protein	NA
UHGV-0161224_6	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0161224_7	PHROG	phrog_2566	NA	unknown function
UHGV-0161224_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0161224_9	PHROG	phrog_291	endolysin	lysis
UHGV-0161224_9	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0161224_9	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0161224_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0161224_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0161224_9	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0161224_10	COG	COG3103	NA	NA
UHGV-0161224_10	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-0161224_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161224_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161224_11	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-0161224_11	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161224_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161224_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161224_11	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0161224_12	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-0161224_12	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0161224_12	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0161224_13	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0161224_13	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0161224_13	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0161224_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0161224_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0161224_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0161224_13	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0161224_14	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0161224_14	PHROG	phrog_14642	endolysin	lysis
UHGV-0161224_14	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-0161224_14	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0161224_14	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0161224_14	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0161224_14	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0161224_15	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0161224_15	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-0161224_15	eggNOG-mapper	1410617.JHXH01000004_gene1309	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0161224_15	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0161224_15	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0161224_15	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0161224_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161224_17	PHROG	phrog_26861	NA	unknown function
UHGV-0161224_17	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0161224_17	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0161224_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161224_17	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0161224_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161224_17	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0161224_19	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0161224_19	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161224_19	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0161224_19	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0161224_19	Pfam	PF13476	AAA domain	AAA_23
UHGV-0161224_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0161224_19	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0161224_21	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161224_21	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0161224_21	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0161224_21	Pfam	PF03837	RecT family	RecT
UHGV-0161224_21	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0161224_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0161224_21	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0161224_22	PHROG	phrog_25456	NA	unknown function
UHGV-0161224_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0161224_23	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0161224_23	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0161224_23	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0161224_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0161224_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0161224_24	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0161224_24	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0161224_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0161224_24	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0161224_26	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0161224_26	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0161224_27	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161224_27	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0161224_27	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0161224_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0161224_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161224_27	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0161224_30	PHROG	phrog_8684	NA	unknown function
UHGV-0161224_30	UniRef90	UniRef90_A0A173W6W0	YopX protein	NA
UHGV-0161224_30	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0161224_30	Pfam	PF09643	YopX protein	YopX
UHGV-0161224_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0161224_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0161224_34	PHROG	phrog_19106	NA	unknown function
UHGV-0161224_34	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0161224_34	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0161224_34	Structural annotation	TIGR01453	NA	NA
UHGV-0161224_37	PHROG	phrog_6724	NA	unknown function
UHGV-0161224_37	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0161224_39	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0161224_39	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0161224_39	AcrCatalog	cluster_47493	NA	NA
UHGV-0161224_39	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0161224_41	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0161224_41	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0161224_41	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0161224_41	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0161224_43	PHROG	phrog_9804	NA	unknown function
UHGV-0161224_43	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0161224_43	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0161224_43	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0161224_43	Structural annotation	PF11417	NA	NA
UHGV-0161224_44	UniRef90	UniRef90_A0A8D9UJ07	Restriction endonuclease	NA
UHGV-0161224_44	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0161224_46	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0161224_46	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0161224_47	KOfam	K14059	int; integrase	NA
UHGV-0161224_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0161224_47	UniRef90	UniRef90_A0A8D9PGQ3	Integrase	NA
UHGV-0161224_47	eggNOG-mapper	411461.DORFOR_02986	NA	NA
UHGV-0161224_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161224_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161224_47	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0161224_49	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0161224_49	Structural annotation	NF033819	NA	NA
UHGV-0161224_50	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0161224_51	PHROG	phrog_16490	NA	unknown function
UHGV-0161224_51	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0161224_52	PHROG	phrog_20016	NA	unknown function
UHGV-0161224_52	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0161224_52	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0161224_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0161224_53	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0161224_54	PHROG	phrog_1233	NA	unknown function
UHGV-0161224_54	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0161224_54	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0161224_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161224_56	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-0161224_56	UniRef90	UniRef90_UPI0015707911	CRISPR-associated protein Cas5	NA
UHGV-0161224_56	eggNOG-mapper	1128398.Curi_c06220	CRISPR-associated protein (Cas_Cas5)	NA
UHGV-0161224_56	PADLOC	cas_Cas5t	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
UHGV-0161224_56	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-0161224_56	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-0161224_58	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0161224_58	UniRef90	UniRef90_UPI001D0722D8	Lar family restriction alleviation protein	NA
UHGV-0161224_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0161224_58	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0161224_59	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0161224_64	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0161224_64	UniRef90	UniRef90_A0A415M7P1	XRE family transcriptional regulator	NA
UHGV-0161224_64	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0161224_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0161224_64	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0161224_67	UniRef90	UniRef90_A0A345N3Q0	Helix-turn-helix protein	NA