UHGV-0161226

Genome information

vOTU vOTU-019625

Genome length 37,502 bps

CDS count 58

Completeness 78.84% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161226
vOTU ID	vOTU-019625
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_470925
BioSample	SAMN06111961
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.65
Jumbo phage	No

Genome content
Genome length	37,502 bps
GC content	39.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.33%
Average CDS length	567.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161226_1	KOfam	K00919	ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]	NA
UHGV-0161226_1	PHROG	phrog_20964	NA	unknown function
UHGV-0161226_1	UniRef90	UniRef90_A0A316M5E2	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase (Fragment)	NA
UHGV-0161226_1	eggNOG-mapper	1232447.BAHW02000049_gene3046	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol	NA
UHGV-0161226_1	Pfam	PF08544	GHMP kinases C terminal	GHMP_kinases_C
UHGV-0161226_1	COG	COG1947	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA
UHGV-0161226_2	KOfam	K22293	rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor	NA
UHGV-0161226_2	PHROG	phrog_38247	NA	unknown function
UHGV-0161226_2	UniRef90	UniRef90_A0A1C6BJ61	Carbon starvation induced regulator	NA
UHGV-0161226_2	eggNOG-mapper	1232447.BAHW02000049_gene3047	FCD	NA
UHGV-0161226_2	Pfam	PF00392	Bacterial regulatory proteins, gntR family	GntR
UHGV-0161226_2	Pfam	PF07729	FCD domain	FCD
UHGV-0161226_2	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0161226_3	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0161226_4	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0161226_4	UniRef90	UniRef90_UPI000D1063A5	NA	NA
UHGV-0161226_4	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0161226_4	Pfam	PF19645	NA	DUF6148
UHGV-0161226_4	Structural annotation	PF19645	NA	NA
UHGV-0161226_5	PHROG	phrog_21	portal protein	head and packaging
UHGV-0161226_5	UniRef90	UniRef90_R6I758	Phage portal protein	NA
UHGV-0161226_5	eggNOG-mapper	1262914.BN533_00293	Phage portal protein	NA
UHGV-0161226_5	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0161226_5	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0161226_5	COG	COG5511	Phage capsid protein	NA
UHGV-0161226_5	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0161226_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0161226_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0161226_6	UniRef90	UniRef90_UPI000F0C7B06	Clp protease ClpP	NA
UHGV-0161226_6	eggNOG-mapper	1262914.BN533_00787	serine-type endopeptidase activity	NA
UHGV-0161226_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0161226_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0161226_6	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0161226_7	PHROG	phrog_49	head decoration	head and packaging
UHGV-0161226_7	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0161226_7	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-0161226_7	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0161226_7	Structural annotation	PF02924	NA	NA
UHGV-0161226_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0161226_8	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0161226_8	eggNOG-mapper	1280706.AUJE01000010_gene659	Phage major capsid protein E	NA
UHGV-0161226_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0161226_8	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0161226_9	Structural annotation	PF10208	NA	NA
UHGV-0161226_10	PHROG	phrog_2551	minor tail protein	tail
UHGV-0161226_10	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-0161226_10	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-0161226_10	Structural annotation	PF13856	NA	NA
UHGV-0161226_11	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0161226_11	UniRef90	UniRef90_UPI001C063072	phage tail protein	NA
UHGV-0161226_11	eggNOG-mapper	1262914.BN533_00997	Prophage minor tail protein Z (GPZ)	NA
UHGV-0161226_11	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0161226_11	Structural annotation	PF06763	NA	NA
UHGV-0161226_12	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0161226_12	UniRef90	UniRef90_R6BN17	Conserved domain protein	NA
UHGV-0161226_12	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-0161226_12	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0161226_13	PHROG	phrog_4089	NA	unknown function
UHGV-0161226_13	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0161226_14	KOfam	K06907	NA	NA
UHGV-0161226_14	PHROG	phrog_23	tail sheath	tail
UHGV-0161226_14	UniRef90	UniRef90_UPI000F0C053C	phage tail sheath family protein	NA
UHGV-0161226_14	eggNOG-mapper	349161.Dred_1212	COG3497 Phage tail sheath protein FI	NA
UHGV-0161226_14	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0161226_14	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0161226_15	KOfam	K06908	NA	NA
UHGV-0161226_15	PHROG	phrog_55	head closure	connector
UHGV-0161226_15	UniRef90	UniRef90_R6J7N4	Phage major tail tube protein	NA
UHGV-0161226_15	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-0161226_15	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0161226_15	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0161226_15	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0161226_16	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0161226_16	UniRef90	UniRef90_A0A075KG58	Mu-like prophage FluMu protein gp41	NA
UHGV-0161226_16	eggNOG-mapper	484770.UFO1_1707	NA	NA
UHGV-0161226_16	Structural annotation	PF10109	NA	NA
UHGV-0161226_18	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0161226_18	UniRef90	UniRef90_UPI000F0C0B13	phage tail tape measure protein	NA
UHGV-0161226_18	eggNOG-mapper	864563.HMPREF9166_0558	Phage tail tape measure protein, TP901 family	NA
UHGV-0161226_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0161226_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0161226_18	COG	COG5283	Phage-related tail protein	NA
UHGV-0161226_18	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0161226_19	PHROG	phrog_46	tail protein	tail
UHGV-0161226_19	UniRef90	UniRef90_R6IAK0	Phage Tail Protein X	NA
UHGV-0161226_19	eggNOG-mapper	1262914.BN533_01376	Phage Tail Protein X	NA
UHGV-0161226_19	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0161226_19	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0161226_19	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0161226_20	KOfam	K06905	NA	NA
UHGV-0161226_20	PHROG	phrog_52	tail protein	tail
UHGV-0161226_20	UniRef90	UniRef90_J4UR03	Phage late control protein D protein	NA
UHGV-0161226_20	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0161226_20	COG	COG3500	NA	NA
UHGV-0161226_20	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0161226_21	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0161226_21	UniRef90	UniRef90_R6I8Z7	Phage baseplate assembly protein V	NA
UHGV-0161226_21	eggNOG-mapper	1262914.BN533_01719	Phage baseplate assembly protein V	NA
UHGV-0161226_21	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0161226_21	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0161226_21	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0161226_22	PHROG	phrog_5039	NA	unknown function
UHGV-0161226_22	eggNOG-mapper	290397.Adeh_3868	NA	NA
UHGV-0161226_23	UniRef90	UniRef90_UPI001E3B4F95	NA	NA
UHGV-0161226_23	eggNOG-mapper	642492.Clole_0762	domain, Protein	NA
UHGV-0161226_23	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0161226_24	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0161226_24	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0161226_24	eggNOG-mapper	1262914.BN533_01715	PAAR repeat-containing protein	NA
UHGV-0161226_24	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0161226_24	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0161226_24	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0161226_25	KOfam	K06906	NA	NA
UHGV-0161226_25	PHROG	phrog_76	tail protein	tail
UHGV-0161226_25	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-0161226_25	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0161226_25	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0161226_25	COG	COG3499	NA	NA
UHGV-0161226_25	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0161226_26	KOfam	K06903	NA	NA
UHGV-0161226_26	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0161226_26	UniRef90	UniRef90_R6J8Q0	GPW_gp25 domain-containing protein	NA
UHGV-0161226_26	eggNOG-mapper	1262914.BN533_01713	GPW Gp25 family protein	NA
UHGV-0161226_26	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0161226_26	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0161226_26	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0161226_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0161226_27	UniRef90	UniRef90_R6IMP8	Putative bacteriophage baseplate assembly protein	NA
UHGV-0161226_27	eggNOG-mapper	1262914.BN533_01712	Baseplate J-like protein	NA
UHGV-0161226_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0161226_27	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0161226_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0161226_28	PHROG	phrog_48	tail protein	tail
UHGV-0161226_28	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0161226_28	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0161226_28	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0161226_28	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0161226_28	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0161226_28	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0161226_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0161226_29	UniRef90	UniRef90_UPI00195ED1C3	phage tail protein	NA
UHGV-0161226_29	eggNOG-mapper	484770.UFO1_1716	Phage tail-collar fibre protein	NA
UHGV-0161226_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0161226_29	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-0161226_32	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0161226_32	Structural annotation	PF14301	NA	NA
UHGV-0161226_33	KOfam	K14059	int; integrase	NA
UHGV-0161226_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0161226_33	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-0161226_33	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0161226_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161226_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161226_33	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0161226_34	PHROG	phrog_199	holin	lysis
UHGV-0161226_34	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0161226_34	eggNOG-mapper	546271.Selsp_1310	Bacteriophage holin family	NA
UHGV-0161226_34	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161226_34	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161226_35	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0161226_35	PHROG	phrog_894	endolysin	lysis
UHGV-0161226_35	UniRef90	UniRef90_UPI000F0C7FC9	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0161226_35	eggNOG-mapper	696369.KI912183_gene1840	Peptidase M15A	NA
UHGV-0161226_35	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0161226_35	COG	COG3108	NA	NA
UHGV-0161226_35	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0161226_36	PHROG	phrog_1281	NA	unknown function
UHGV-0161226_36	UniRef90	UniRef90_I8TQN0	NA	NA
UHGV-0161226_36	eggNOG-mapper	1211844.CBLM010000016_gene1502	NA	NA
UHGV-0161226_36	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0161226_36	COG	COG3600	NA	NA
UHGV-0161226_37	PHROG	phrog_5763	NA	unknown function
UHGV-0161226_37	eggNOG-mapper	1211844.CBLM010000016_gene1501	NA	NA
UHGV-0161226_39	UniRef90	UniRef90_UPI00037A9378	TIGR02328 family protein	NA
UHGV-0161226_39	eggNOG-mapper	1123301.KB904195_gene25	Pyrimidine dimer DNA glycosylase	NA
UHGV-0161226_39	Pfam	PF03013	Pyrimidine dimer DNA glycosylase	Pyr_excise
UHGV-0161226_39	NCBIFam	TIGR02328.1	TIGR02328 family protein	NA
UHGV-0161226_39	Structural annotation	PF03013, TIGR02328	NA	NA
UHGV-0161226_40	KOfam	K13772	rirA; Rrf2 family transcriptional regulator, iron-responsive regulator	NA
UHGV-0161226_40	UniRef90	UniRef90_R6IFT6	Rrf2 family protein	NA
UHGV-0161226_40	eggNOG-mapper	1262914.BN533_00552	Transcriptional regulator	NA
UHGV-0161226_40	Pfam	PF02082	Iron-dependent Transcriptional regulator	Rrf2
UHGV-0161226_40	NCBIFam	TIGR00738.1	Rrf2 family transcriptional regulator	NA
UHGV-0161226_40	COG	COG1959	DNA-binding transcriptional regulator, IscR family	NA
UHGV-0161226_43	KOfam	K12684	esp, sigA, sepA; serine protease autotransporter [EC:3.4.21.-]	NA
UHGV-0161226_43	UniRef90	UniRef90_A0A1B3WF55	Autotransporter domain-containing protein	NA
UHGV-0161226_43	eggNOG-mapper	1262914.BN533_01378	Product inferred by homology to UniProt	NA
UHGV-0161226_43	Pfam	PF03797	Autotransporter beta-domain	Autotransporter
UHGV-0161226_43	NCBIFam	TIGR01414.1	autotransporter outer membrane beta-barrel domain-containing protein	NA
UHGV-0161226_43	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0161226_44	KOfam	K14059	int; integrase	NA
UHGV-0161226_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0161226_44	UniRef90	UniRef90_A0A8B2QR13	Site-specific recombinase XerD	NA
UHGV-0161226_44	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0161226_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0161226_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161226_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161226_44	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0161226_45	Structural annotation	PF06114	NA	NA
UHGV-0161226_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161226_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161226_46	UniRef90	UniRef90_A0A8B2QLV3	DNA-binding XRE family transcriptional regulator	NA
UHGV-0161226_46	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161226_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161226_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161226_46	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161226_47	UniRef90	UniRef90_UPI0008D90F56	helix-turn-helix domain-containing protein	NA
UHGV-0161226_47	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0161226_49	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161226_49	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-0161226_49	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-0161226_49	Structural annotation	COG2250	NA	NA
UHGV-0161226_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0161226_55	PHROG	phrog_3292	NA	unknown function
UHGV-0161226_55	UniRef90	UniRef90_A0A412X6L4	KTSC domain-containing protein	NA
UHGV-0161226_55	eggNOG-mapper	679201.HMPREF9334_01266	KTSC domain	NA
UHGV-0161226_55	Pfam	PF13619	KTSC domain	KTSC
UHGV-0161226_55	Structural annotation	PF13619	NA	NA
UHGV-0161226_58	PHROG	phrog_1366	NA	unknown function
UHGV-0161226_58	UniRef90	UniRef90_A0A661JH92	AAA domain-containing protein (Fragment)	NA
UHGV-0161226_58	eggNOG-mapper	247490.KSU1_C0229	AAA domain	NA
UHGV-0161226_58	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161226_58	COG	COG0468	RecA/RadA recombinase	NA