UHGV-0161235

Genome information

Genome length 36,282 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161235
vOTU ID	vOTU-076628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_494658
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.45
Jumbo phage	No

Genome content
Genome length	36,282 bps
GC content	58.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.60%
Average CDS length	648.52 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161235_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0161235_1	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-0161235_1	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0161235_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0161235_1	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0161235_1	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0161235_2	KOfam	K14059	int; integrase	NA
UHGV-0161235_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0161235_2	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0161235_2	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0161235_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0161235_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161235_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161235_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0161235_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161235_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161235_4	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0161235_4	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0161235_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0161235_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161235_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161235_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161235_5	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0161235_8	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0161235_8	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0161235_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0161235_9	PHROG	phrog_32852	NA	unknown function
UHGV-0161235_12	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0161235_14	PHROG	phrog_1733	NA	unknown function
UHGV-0161235_14	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0161235_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0161235_14	Structural annotation	PF03677	NA	NA
UHGV-0161235_15	PHROG	phrog_38771	NA	unknown function
UHGV-0161235_16	PHROG	phrog_674	NA	unknown function
UHGV-0161235_16	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0161235_16	eggNOG-mapper	742722.HMPREF9463_00201	NA	NA
UHGV-0161235_16	Pfam	PF07083	NA	DUF1351
UHGV-0161235_16	Structural annotation	PF07083	NA	NA
UHGV-0161235_17	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161235_17	UniRef90	UniRef90_A0A2A7BH07	Phage recombination protein Bet	NA
UHGV-0161235_17	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0161235_17	Pfam	PF03837	RecT family	RecT
UHGV-0161235_17	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0161235_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0161235_17	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0161235_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161235_18	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0161235_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161235_18	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0161235_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0161235_19	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0161235_19	eggNOG-mapper	926562.Oweho_0014	DnaD domain protein	NA
UHGV-0161235_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0161235_19	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0161235_20	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161235_20	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0161235_20	eggNOG-mapper	386415.NT01CX_2186	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0161235_20	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0161235_21	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0161235_22	PHROG	phrog_2412	NA	unknown function
UHGV-0161235_22	UniRef90	UniRef90_UPI000DE85101	stress-induced protein	NA
UHGV-0161235_22	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0161235_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161235_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0161235_23	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0161235_23	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0161235_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161235_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161235_23	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161235_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161235_24	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0161235_24	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0161235_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0161235_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161235_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161235_25	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-0161235_25	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0161235_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161235_25	COG	COG2369	NA	NA
UHGV-0161235_25	Structural annotation	PF06152	NA	NA
UHGV-0161235_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0161235_27	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0161235_27	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0161235_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161235_28	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0161235_28	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0161235_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161235_28	Structural annotation	PF06810	NA	NA
UHGV-0161235_29	PHROG	phrog_267	major head protein	head and packaging
UHGV-0161235_29	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0161235_29	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0161235_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161235_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161235_31	PHROG	phrog_3366	NA	unknown function
UHGV-0161235_31	Pfam	PF20536	NA	DUF6751
UHGV-0161235_31	Structural annotation	PF20536	NA	NA
UHGV-0161235_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161235_32	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-0161235_32	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0161235_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161235_32	Structural annotation	PF11114	NA	NA
UHGV-0161235_33	PHROG	phrog_3266	tail completion	connector
UHGV-0161235_33	UniRef90	UniRef90_A0A7G9WJF2	Chloramphenicol resistance protein	NA
UHGV-0161235_33	eggNOG-mapper	718252.FP2_06620	NA	NA
UHGV-0161235_33	Structural annotation	PF12691	NA	NA
UHGV-0161235_34	PHROG	phrog_820	major tail protein	tail
UHGV-0161235_34	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0161235_34	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-0161235_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161235_35	Structural annotation	PF20378	NA	NA
UHGV-0161235_36	PHROG	phrog_706	NA	unknown function
UHGV-0161235_36	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0161235_36	eggNOG-mapper	663278.Ethha_0101	Bacteriophage Gp15 protein	NA
UHGV-0161235_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161235_36	Structural annotation	PF06854	NA	NA
UHGV-0161235_37	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0161235_37	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0161235_37	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0161235_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0161235_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0161235_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0161235_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0161235_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0161235_38	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0161235_38	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0161235_39	PHROG	phrog_18110	NA	unknown function
UHGV-0161235_39	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0161235_39	eggNOG-mapper	272562.CA_C1879	Phage minor structural protein	NA
UHGV-0161235_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0161235_39	COG	COG4926	Phage-related protein	NA
UHGV-0161235_39	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0161235_40	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0161235_40	COG	COG5492	NA	NA
UHGV-0161235_41	PHROG	phrog_2310	NA	unknown function
UHGV-0161235_42	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0161235_42	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0161235_42	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0161235_42	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0161235_42	Structural annotation	PF10651	NA	NA
UHGV-0161235_44	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0161235_44	PHROG	phrog_894	endolysin	lysis
UHGV-0161235_44	UniRef90	UniRef90_A0A3C0D0L9	Peptidase M15	NA
UHGV-0161235_44	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0161235_44	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0161235_44	COG	COG3108	NA	NA
UHGV-0161235_44	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0161235_45	PHROG	phrog_199	holin	lysis
UHGV-0161235_45	UniRef90	UniRef90_A0A2A6ZGX7	Holin	NA
UHGV-0161235_45	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0161235_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161235_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0161235_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0161235_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161235_46	PHROG	phrog_263	holin	lysis
UHGV-0161235_46	UniRef90	UniRef90_A0A2A7AI87	Phage holin	NA
UHGV-0161235_46	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-0161235_46	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0161235_46	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0161235_46	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0161235_47	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-0161235_47	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0161235_48	UniRef90	UniRef90_UPI001D0EC4CC	NA	NA
UHGV-0161235_48	Structural annotation	PF14213	NA	NA
UHGV-0161235_52	UniRef90	UniRef90_A0A3G9JVR1	Fibronectin type-III domain-containing protein	NA
UHGV-0161235_52	eggNOG-mapper	748224.HMPREF9436_03164	NA	NA