UHGV-0161266

Genome information

Genome length 43,467 bps

CDS count 67

Completeness 96.37% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161266
vOTU ID	vOTU-064432
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497747
BioSample	SAMN06110454
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.9
Jumbo phage	No

Genome content
Genome length	43,467 bps
GC content	42.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.95%
Average CDS length	587.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161266_1	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0161266_1	eggNOG-mapper	903814.ELI_3237	sequence-specific DNA binding	NA
UHGV-0161266_1	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161266_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161266_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161266_3	KOfam	K07496	K07496; putative transposase	NA
UHGV-0161266_3	PHROG	phrog_506	transposase	integration and excision
UHGV-0161266_3	UniRef90	UniRef90_D4LLF4	Transposase, IS605 OrfB family, central region	NA
UHGV-0161266_3	eggNOG-mapper	457412.RSAG_01324	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0161266_3	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0161266_3	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0161266_3	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0161266_3	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0161266_3	COG	COG0675	Transposase	NA
UHGV-0161266_3	Structural annotation	PF01385, MF_00034, NF038281, COG0675	NA	NA
UHGV-0161266_4	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0161266_4	PHROG	phrog_2577	transposase	integration and excision
UHGV-0161266_4	UniRef90	UniRef90_A0A1C5UN40	Transposase and inactivated derivatives	NA
UHGV-0161266_4	eggNOG-mapper	1121115.AXVN01000068_gene3406	Transposase IS200 like	NA
UHGV-0161266_4	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0161266_4	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0161266_4	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0161266_7	PHROG	phrog_6058	NA	unknown function
UHGV-0161266_7	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0161266_7	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0161266_8	AcrCatalog	cluster_17974	NA	NA
UHGV-0161266_12	Structural annotation	NF001645	NA	NA
UHGV-0161266_13	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0161266_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161266_14	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0161266_14	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0161266_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161266_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161266_15	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161266_15	UniRef90	UniRef90_A0A6S6XZY4	HNH endonuclease	NA
UHGV-0161266_15	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0161266_15	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0161266_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0161266_15	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0161266_15	Structural annotation	PF13392	NA	NA
UHGV-0161266_16	PHROG	phrog_18107	NA	unknown function
UHGV-0161266_16	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0161266_16	Structural annotation	PF05037	NA	NA
UHGV-0161266_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0161266_17	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0161266_17	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0161266_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0161266_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0161266_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0161266_18	PHROG	phrog_11992	NA	unknown function
UHGV-0161266_18	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0161266_18	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0161266_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0161266_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0161266_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0161266_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0161266_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0161266_19	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0161266_19	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0161266_19	Pfam	PF06048	NA	DUF927
UHGV-0161266_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0161266_19	COG	COG5519	NA	NA
UHGV-0161266_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0161266_20	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0161266_20	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0161266_20	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0161266_20	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0161266_20	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0161266_20	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0161266_20	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0161266_20	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-0161266_22	PHROG	phrog_3502	NA	unknown function
UHGV-0161266_22	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0161266_22	eggNOG-mapper	525256.HMPREF0091_10731	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0161266_22	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0161266_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0161266_22	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0161266_23	Structural annotation	PF04936	NA	NA
UHGV-0161266_25	Structural annotation	PF18350, TIGR00739, COG1862	NA	NA
UHGV-0161266_26	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0161266_26	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0161266_26	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-0161266_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0161266_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0161266_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0161266_27	PHROG	phrog_4601	NA	unknown function
UHGV-0161266_27	Structural annotation	PF17888	NA	NA
UHGV-0161266_28	PHROG	phrog_15198	NA	unknown function
UHGV-0161266_28	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0161266_28	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0161266_28	Pfam	PF04448	NA	DUF551
UHGV-0161266_31	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0161266_31	AcrCatalog	cluster_11670	NA	NA
UHGV-0161266_32	PHROG	phrog_20593	NA	unknown function
UHGV-0161266_36	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0161266_38	PHROG	phrog_10714	NA	unknown function
UHGV-0161266_38	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0161266_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0161266_39	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0161266_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0161266_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0161266_39	Structural annotation	PF16677	NA	NA
UHGV-0161266_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161266_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0161266_40	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0161266_40	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0161266_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0161266_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0161266_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161266_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161266_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161266_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161266_41	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0161266_41	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0161266_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161266_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161266_42	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0161266_42	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0161266_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161266_42	COG	COG2369	NA	NA
UHGV-0161266_42	Structural annotation	PF06152	NA	NA
UHGV-0161266_43	PHROG	phrog_3754	NA	unknown function
UHGV-0161266_43	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0161266_44	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0161266_44	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0161266_45	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161266_45	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0161266_45	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0161266_46	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0161266_46	AcrCatalog	cluster_81672	NA	NA
UHGV-0161266_47	PHROG	phrog_21718	NA	unknown function
UHGV-0161266_47	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0161266_48	PHROG	phrog_22984	NA	unknown function
UHGV-0161266_49	PHROG	phrog_16490	NA	unknown function
UHGV-0161266_49	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0161266_50	PHROG	phrog_20016	NA	unknown function
UHGV-0161266_50	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0161266_50	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0161266_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0161266_51	PHROG	phrog_28802	NA	unknown function
UHGV-0161266_51	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0161266_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161266_52	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0161266_52	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0161266_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161266_52	Structural annotation	PF06810	NA	NA
UHGV-0161266_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0161266_53	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0161266_53	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0161266_53	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0161266_53	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161266_54	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161266_54	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0161266_55	PHROG	phrog_1233	NA	unknown function
UHGV-0161266_55	eggNOG-mapper	476272.RUMHYD_01960	NA	NA
UHGV-0161266_56	PHROG	phrog_1129	holin	lysis
UHGV-0161266_56	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0161266_56	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0161266_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0161266_56	Structural annotation	PF06946	NA	NA
UHGV-0161266_57	PHROG	phrog_3366	NA	unknown function
UHGV-0161266_57	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0161266_57	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0161266_58	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161266_58	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0161266_58	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0161266_58	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161266_58	Structural annotation	PF11114	NA	NA
UHGV-0161266_59	PHROG	phrog_3266	tail completion	connector
UHGV-0161266_59	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0161266_59	Structural annotation	PF12691	NA	NA
UHGV-0161266_60	PHROG	phrog_3099	NA	unknown function
UHGV-0161266_60	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0161266_60	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161266_61	PHROG	phrog_11299	NA	unknown function
UHGV-0161266_61	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0161266_61	Structural annotation	PF10666	NA	NA
UHGV-0161266_62	PHROG	phrog_706	NA	unknown function
UHGV-0161266_62	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0161266_62	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0161266_62	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161266_62	Structural annotation	PF06854	NA	NA
UHGV-0161266_63	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161266_63	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0161266_63	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0161266_63	COG	COG1511	NA	NA
UHGV-0161266_63	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0161266_64	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0161266_65	PHROG	phrog_6616	tail protein	tail
UHGV-0161266_65	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0161266_65	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0161266_65	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0161266_65	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0161266_66	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0161266_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0161266_66	UniRef90	UniRef90_UPI001D0E7AAB	tyrosine-type recombinase/integrase	NA
UHGV-0161266_66	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0161266_66	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0161266_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161266_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0161266_66	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0161266_67	KOfam	K07273	acm; lysozyme	NA
UHGV-0161266_67	PHROG	phrog_291	endolysin	lysis
UHGV-0161266_67	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-0161266_67	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0161266_67	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0161266_67	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0161266_67	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0161266_67	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA