UHGV-0161293

Genome information

Genome length 37,250 bps

CDS count 74

Completeness 64.62% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161293
vOTU ID	vOTU-028030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497100
BioSample	SAMN06110344
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.62
Jumbo phage	No

Genome content
Genome length	37,250 bps
GC content	48.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	89.44%
Average CDS length	453.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161293_2	PHROG	phrog_1194	NA	unknown function
UHGV-0161293_2	Pfam	PF20458	NA	DUF6711
UHGV-0161293_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0161293_3	PHROG	phrog_13879	NA	unknown function
UHGV-0161293_3	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0161293_3	Pfam	PF19789	NA	DUF6273
UHGV-0161293_3	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0161293_4	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0161293_4	COG	COG5492	NA	NA
UHGV-0161293_4	Structural annotation	PF15417, NF041539	NA	NA
UHGV-0161293_5	PHROG	phrog_35313	NA	unknown function
UHGV-0161293_5	UniRef90	UniRef90_A0A3E0AFC2	Putative BNR repeat neuraminidase	NA
UHGV-0161293_5	eggNOG-mapper	882082.SaccyDRAFT_3252	BNR repeat-containing family member	NA
UHGV-0161293_5	COG	COG4225	Rhamnogalacturonyl hydrolase YesR	NA
UHGV-0161293_5	Structural annotation	PF05096, MF_03141, NF035926, COG3823	NA	NA
UHGV-0161293_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0161293_6	PHROG	phrog_291	endolysin	lysis
UHGV-0161293_6	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0161293_6	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0161293_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0161293_6	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0161293_6	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0161293_7	PHROG	phrog_1863	NA	unknown function
UHGV-0161293_7	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0161293_8	PHROG	phrog_15303	NA	unknown function
UHGV-0161293_11	UniRef90	UniRef90_A0A3D0M2U4	RHH_1 domain-containing protein	NA
UHGV-0161293_11	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0161293_11	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0161293_12	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161293_12	UniRef90	UniRef90_A0A2Z4QA49	AP2 protein	NA
UHGV-0161293_12	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0161293_17	PHROG	phrog_16490	NA	unknown function
UHGV-0161293_17	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0161293_18	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0161293_19	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0161293_23	Structural annotation	PF07878	NA	NA
UHGV-0161293_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0161293_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0161293_25	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0161293_25	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0161293_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0161293_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0161293_25	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0161293_27	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161293_27	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0161293_27	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0161293_27	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0161293_27	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0161293_27	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0161293_27	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0161293_28	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0161293_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161293_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161293_28	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161293_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161293_31	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0161293_31	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0161293_31	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0161293_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161293_32	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0161293_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161293_32	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0161293_33	Structural annotation	PF10922	NA	NA
UHGV-0161293_35	Structural annotation	TIGR03826	NA	NA
UHGV-0161293_37	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0161293_37	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0161293_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0161293_40	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0161293_41	Structural annotation	PF14143	NA	NA
UHGV-0161293_42	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0161293_42	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0161293_42	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0161293_44	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161293_44	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0161293_44	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0161293_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161293_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161293_45	PHROG	phrog_18107	NA	unknown function
UHGV-0161293_45	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0161293_45	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0161293_45	Structural annotation	PF05037	NA	NA
UHGV-0161293_46	PHROG	phrog_4572	NA	unknown function
UHGV-0161293_46	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0161293_47	PHROG	phrog_35094	NA	unknown function
UHGV-0161293_47	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0161293_49	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161293_49	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0161293_49	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0161293_49	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0161293_51	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0161293_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0161293_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0161293_53	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0161293_53	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0161293_53	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0161293_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0161293_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0161293_53	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0161293_57	Structural annotation	PF16677	NA	NA
UHGV-0161293_59	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0161293_59	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0161293_59	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0161293_59	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0161293_67	Structural annotation	NF041588	NA	NA
UHGV-0161293_70	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0161293_70	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0161293_70	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0161293_70	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0161293_70	Structural annotation	NF007260	NA	NA
UHGV-0161293_71	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0161293_71	Pfam	PF19808	NA	DUF6291
UHGV-0161293_71	Structural annotation	PF19808	NA	NA
UHGV-0161293_72	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0161293_72	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0161293_72	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0161293_72	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0161293_72	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0161293_72	COG	COG0305	Replicative DNA helicase	NA
UHGV-0161293_72	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0161293_73	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0161293_73	UniRef90	UniRef90_A0A6L5TFB3	Radical SAM protein	NA
UHGV-0161293_73	eggNOG-mapper	1235798.C817_03186	NA	NA
UHGV-0161293_73	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0161293_73	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0161293_74	UniRef90	UniRef90_A0A843GUM6	Membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0161293_74	eggNOG-mapper	1121865.OMW_01950	NA	NA