UHGV-0161313

Genome information

Genome length 35,119 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161313
vOTU ID	vOTU-009200
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453693
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.59
Jumbo phage	No

Genome content
Genome length	35,119 bps
GC content	42.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.04%
Average CDS length	581.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161313_1	KOfam	K07646	kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]	NA
UHGV-0161313_1	PHROG	phrog_857	NA	unknown function
UHGV-0161313_1	UniRef90	UniRef90_A0A1C5R0S2	Histidine kinase	NA
UHGV-0161313_1	eggNOG-mapper	742765.HMPREF9457_02597	NA	NA
UHGV-0161313_1	Pfam	PF13493	NA	DUF4118
UHGV-0161313_1	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0161313_1	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0161313_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0161313_2	PHROG	phrog_14030	NA	unknown function
UHGV-0161313_2	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-0161313_2	eggNOG-mapper	742765.HMPREF9457_03362	NA	NA
UHGV-0161313_2	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0161313_3	PHROG	phrog_443	holin	lysis
UHGV-0161313_3	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0161313_3	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0161313_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0161313_3	Structural annotation	PF16945	NA	NA
UHGV-0161313_4	PHROG	phrog_4105	NA	unknown function
UHGV-0161313_4	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0161313_5	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0161313_7	eggNOG-mapper	411461.DORFOR_01181	NA	NA
UHGV-0161313_8	PHROG	phrog_12931	NA	unknown function
UHGV-0161313_8	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-0161313_9	PHROG	phrog_9994	NA	unknown function
UHGV-0161313_9	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0161313_9	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0161313_9	Structural annotation	PF20747	NA	NA
UHGV-0161313_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0161313_10	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0161313_10	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0161313_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0161313_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0161313_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0161313_11	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0161313_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0161313_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0161313_12	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0161313_12	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0161313_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0161313_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0161313_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0161313_13	PHROG	phrog_706	NA	unknown function
UHGV-0161313_13	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0161313_13	eggNOG-mapper	428125.CLOLEP_00176	Bacteriophage Gp15 protein	NA
UHGV-0161313_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161313_13	Structural annotation	PF06854	NA	NA
UHGV-0161313_14	Structural annotation	PF10666	NA	NA
UHGV-0161313_15	PHROG	phrog_820	major tail protein	tail
UHGV-0161313_15	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0161313_15	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0161313_15	COG	COG5492	NA	NA
UHGV-0161313_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161313_16	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0161313_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0161313_16	Structural annotation	PF12691	NA	NA
UHGV-0161313_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161313_17	UniRef90	UniRef90_UPI0015F726FA	minor capsid protein	NA
UHGV-0161313_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161313_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0161313_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0161313_18	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0161313_18	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0161313_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0161313_18	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0161313_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0161313_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161313_19	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0161313_19	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0161313_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0161313_20	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0161313_20	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0161313_20	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0161313_20	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161313_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0161313_22	KOfam	K07584	NA	NA
UHGV-0161313_22	PHROG	phrog_4478	peptidase	other
UHGV-0161313_22	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0161313_22	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0161313_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0161313_22	COG	COG2868	NA	NA
UHGV-0161313_22	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0161313_23	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0161313_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161313_24	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0161313_24	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0161313_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161313_24	COG	COG2369	NA	NA
UHGV-0161313_24	Structural annotation	PF06152	NA	NA
UHGV-0161313_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161313_25	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0161313_25	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0161313_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0161313_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161313_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161313_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0161313_26	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0161313_26	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0161313_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161313_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161313_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161313_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161313_27	PHROG	phrog_2412	NA	unknown function
UHGV-0161313_27	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0161313_27	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0161313_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161313_29	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0161313_29	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0161313_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0161313_29	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0161313_31	PHROG	phrog_3253	NA	unknown function
UHGV-0161313_31	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0161313_31	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0161313_32	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0161313_32	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0161313_32	UniRef90	UniRef90_A0A3E5GPG3	DNA methylase N-4	NA
UHGV-0161313_32	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0161313_32	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0161313_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0161313_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0161313_32	Structural annotation	PF01555, PF13871, MF_01872, NF008572, COG0863	NA	NA
UHGV-0161313_33	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0161313_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0161313_33	UniRef90	UniRef90_UPI001E5CFEF3	SNF2-related protein	NA
UHGV-0161313_33	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0161313_33	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0161313_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0161313_33	Structural annotation	PF00176, MF_00661, TIGR04095, COG1061	NA	NA
UHGV-0161313_34	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161313_34	UniRef90	UniRef90_UPI00156F191E	NUMOD4 domain-containing protein	NA
UHGV-0161313_34	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0161313_34	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0161313_34	Structural annotation	PF13392	NA	NA
UHGV-0161313_35	PHROG	phrog_15768	NA	unknown function
UHGV-0161313_35	UniRef90	UniRef90_A0A415H5D2	NA	NA
UHGV-0161313_35	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0161313_35	AcrCatalog	cluster_38323	NA	NA
UHGV-0161313_35	Pfam	PF19808	NA	DUF6291
UHGV-0161313_35	Structural annotation	PF19808	NA	NA
UHGV-0161313_36	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161313_36	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0161313_36	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0161313_38	PHROG	phrog_7566	NA	unknown function
UHGV-0161313_38	UniRef90	UniRef90_A0A412EXQ2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0161313_38	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0161313_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0161313_39	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0161313_39	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0161313_40	PHROG	phrog_11717	NA	unknown function
UHGV-0161313_40	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0161313_40	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0161313_43	UniRef90	UniRef90_UPI001F2FF670	CbrC family protein	NA
UHGV-0161313_45	PHROG	phrog_32342	NA	unknown function
UHGV-0161313_47	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0161313_48	PHROG	phrog_585	NA	unknown function
UHGV-0161313_48	UniRef90	UniRef90_A0A6L8RYV5	NA	NA
UHGV-0161313_48	eggNOG-mapper	526218.Sterm_0828	NA	NA
UHGV-0161313_48	Pfam	PF10711	NA	DUF2513
UHGV-0161313_48	Structural annotation	PF10711, TIGR03433, COG1695	NA	NA
UHGV-0161313_51	UniRef90	UniRef90_A0A1C5ULX1	HTH cro/C1-type domain-containing protein	NA
UHGV-0161313_51	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0161313_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161313_51	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0161313_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161313_52	UniRef90	UniRef90_A0A414S2U7	XRE family transcriptional regulator	NA
UHGV-0161313_52	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0161313_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0161313_52	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0161313_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161313_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161313_53	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-0161313_53	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161313_53	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161313_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161313_53	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0161313_54	PHROG	phrog_87	metallo-protease	other
UHGV-0161313_54	UniRef90	UniRef90_A0A1C5SMT9	Metallopeptidase immA	NA
UHGV-0161313_54	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0161313_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161313_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0161313_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0161313_55	PHROG	phrog_38135	NA	unknown function
UHGV-0161313_55	UniRef90	UniRef90_UPI001A9A5F68	NA	NA
UHGV-0161313_55	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0161313_55	Pfam	PF14020	NA	DUF4236
UHGV-0161313_55	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0161313_55	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0161313_56	KOfam	K14059	int; integrase	NA
UHGV-0161313_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0161313_56	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0161313_56	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0161313_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161313_56	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA