UHGV-0161318

Genome information

Genome length 36,071 bps

CDS count 57

Completeness 84.39% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161318
vOTU ID	vOTU-028032
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_496997
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.59
Jumbo phage	No

Genome content
Genome length	36,071 bps
GC content	56.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.58%
Average CDS length	582.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161318_4	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161318_4	UniRef90	UniRef90_A0A1M4V1T4	AAA domain-containing protein	NA
UHGV-0161318_4	eggNOG-mapper	742742.HMPREF9452_00434	NA	NA
UHGV-0161318_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161318_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161318_7	eggNOG-mapper	742742.HMPREF9452_00433	NA	NA
UHGV-0161318_7	Structural annotation	PF05037	NA	NA
UHGV-0161318_8	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0161318_8	UniRef90	UniRef90_A0A1C5ZN40	ERCC4 domain-containing protein	NA
UHGV-0161318_8	eggNOG-mapper	742742.HMPREF9452_00432	NA	NA
UHGV-0161318_8	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0161318_9	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0161318_9	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0161318_9	UniRef90	UniRef90_A0A3D1WTW9	SF3 helicase domain-containing protein	NA
UHGV-0161318_9	eggNOG-mapper	1423775.BAMN01000011_gene612	DNA primase	NA
UHGV-0161318_9	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0161318_9	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0161318_9	Pfam	PF19263	NA	DUF5906
UHGV-0161318_9	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0161318_9	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0161318_9	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-0161318_12	Structural annotation	PF17399	NA	NA
UHGV-0161318_18	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0161318_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0161318_18	eggNOG-mapper	742722.HMPREF9463_00214	C-5 cytosine-specific DNA methylase	NA
UHGV-0161318_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0161318_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161318_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161318_18	Structural annotation	PF00145, MF_00607, TIGR00675, COG0270	NA	NA
UHGV-0161318_20	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0161318_20	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0161318_20	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0161318_21	KOfam	K06940	NA	NA
UHGV-0161318_21	PHROG	phrog_32498	NA	unknown function
UHGV-0161318_21	UniRef90	UniRef90_A0A5K1JEP9	Flagellin N-methylase	NA
UHGV-0161318_21	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0161318_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0161318_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0161318_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0161318_22	UniRef90	UniRef90_A0A5K1JD62	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0161318_22	eggNOG-mapper	999419.HMPREF1077_01720	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0161318_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-0161318_22	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0161318_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0161318_22	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0161318_25	Structural annotation	PF10668, TIGR01321	NA	NA
UHGV-0161318_26	Structural annotation	PF12857	NA	NA
UHGV-0161318_27	UniRef90	UniRef90_A0A412HTW9	NA	NA
UHGV-0161318_28	Structural annotation	PF20987	NA	NA
UHGV-0161318_29	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0161318_34	PHROG	phrog_15863	NA	unknown function
UHGV-0161318_34	UniRef90	UniRef90_R2R4P3	J domain-containing protein	NA
UHGV-0161318_34	eggNOG-mapper	1158602.I590_04189	DnaJ molecular chaperone homology domain	NA
UHGV-0161318_34	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0161318_41	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0161318_41	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-0161318_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0161318_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0161318_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0161318_42	UniRef90	UniRef90_A0A5K1IZ70	Phage Terminase	NA
UHGV-0161318_42	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0161318_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0161318_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0161318_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161318_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0161318_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0161318_43	UniRef90	UniRef90_UPI0012DD2CF8	phage portal protein	NA
UHGV-0161318_43	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0161318_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0161318_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0161318_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0161318_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0161318_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0161318_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0161318_44	UniRef90	UniRef90_A0A5K1JFC3	ATP-dependent Clp protease proteolytic subunit 1	NA
UHGV-0161318_44	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-0161318_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0161318_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0161318_44	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0161318_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0161318_45	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-0161318_45	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-0161318_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161318_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0161318_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161318_46	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0161318_46	Structural annotation	TIGR02215	NA	NA
UHGV-0161318_47	Structural annotation	PF06141	NA	NA
UHGV-0161318_48	PHROG	phrog_290	minor tail protein	tail
UHGV-0161318_48	UniRef90	UniRef90_UPI0012DF3876	phage tail tube protein	NA
UHGV-0161318_48	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0161318_48	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0161318_50	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0161318_51	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0161318_51	UniRef90	UniRef90_A0A5K1JCK1	Chromosome partition protein Smc	NA
UHGV-0161318_51	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0161318_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0161318_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0161318_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0161318_51	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0161318_52	UniRef90	UniRef90_A0A5K1JBQ1	Fibronectin type-III domain-containing protein	NA
UHGV-0161318_52	eggNOG-mapper	1504822.CCNO01000015_gene633	cellulase activity	NA
UHGV-0161318_52	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0161318_52	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0161318_53	PHROG	phrog_1887	tail protein	tail
UHGV-0161318_53	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-0161318_53	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0161318_54	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0161318_57	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0161318_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA