UHGV-0161321

Genome information

Genome length 28,012 bps

CDS count 39

Completeness 86.90% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161321
vOTU ID	vOTU-028033
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497000
BioSample	SAMN06110283
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.22
Jumbo phage	No

Genome content
Genome length	28,012 bps
GC content	58.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	91.16%
Average CDS length	661.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161321_2	PHROG	phrog_3205	NA	unknown function
UHGV-0161321_2	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0161321_2	eggNOG-mapper	1121342.AUCO01000012_gene1713	NA	NA
UHGV-0161321_3	PHROG	phrog_21525	NA	unknown function
UHGV-0161321_6	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0161321_6	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-0161321_6	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0161321_6	Pfam	PF11753	NA	DUF3310
UHGV-0161321_6	Structural annotation	PF11753	NA	NA
UHGV-0161321_9	KOfam	K14059	int; integrase	NA
UHGV-0161321_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0161321_9	UniRef90	UniRef90_A0A4Q2K1M9	Site-specific integrase	NA
UHGV-0161321_9	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-0161321_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0161321_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161321_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161321_9	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0161321_10	UniRef90	UniRef90_UPI00103173DD	integration host factor	NA
UHGV-0161321_10	eggNOG-mapper	1381751.JAJB01000023_gene1732	integration host factor	NA
UHGV-0161321_10	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0161321_10	COG	COG0099	Ribosomal protein S13	NA
UHGV-0161321_10	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0161321_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161321_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161321_12	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-0161321_12	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0161321_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161321_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0161321_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161321_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0161321_12	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0161321_13	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0161321_13	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0161321_13	UniRef90	UniRef90_A0A374TU31	dUTP diphosphatase	NA
UHGV-0161321_13	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0161321_13	Pfam	PF00692	dUTPase	dUTPase
UHGV-0161321_13	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0161321_13	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0161321_13	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0161321_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161321_14	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0161321_14	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0161321_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0161321_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161321_15	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-0161321_15	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-0161321_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0161321_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161321_16	PHROG	phrog_1066	NA	unknown function
UHGV-0161321_16	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0161321_16	Structural annotation	TIGR01558	NA	NA
UHGV-0161321_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0161321_17	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-0161321_17	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-0161321_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0161321_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0161321_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161321_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0161321_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0161321_18	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-0161321_18	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-0161321_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0161321_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0161321_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0161321_19	KOfam	K06904	NA	NA
UHGV-0161321_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0161321_19	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-0161321_19	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-0161321_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0161321_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0161321_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0161321_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0161321_20	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-0161321_20	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0161321_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161321_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0161321_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0161321_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161321_21	PHROG	phrog_5223	neck protein	connector
UHGV-0161321_21	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-0161321_21	eggNOG-mapper	1444310.JANV01000004_gene2679	NA	NA
UHGV-0161321_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0161321_22	UniRef90	UniRef90_A0A6N7RLQ4	Phage head-tail adapter protein	NA
UHGV-0161321_22	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0161321_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0161321_23	UniRef90	UniRef90_UPI00148B2708	HK97 gp10 family phage protein	NA
UHGV-0161321_23	eggNOG-mapper	1220589.CD32_00820	NA	NA
UHGV-0161321_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0161321_24	eggNOG-mapper	1121105.ATXL01000027_gene750	NA	NA
UHGV-0161321_24	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0161321_25	PHROG	phrog_88	major tail protein	tail
UHGV-0161321_25	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-0161321_25	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-0161321_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0161321_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0161321_26	Structural annotation	PF12363	NA	NA
UHGV-0161321_28	PHROG	phrog_23464	NA	unknown function
UHGV-0161321_28	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-0161321_28	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0161321_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0161321_28	Structural annotation	COG5280	NA	NA
UHGV-0161321_29	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0161321_29	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-0161321_29	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0161321_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0161321_29	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0161321_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0161321_29	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0161321_30	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0161321_30	UniRef90	UniRef90_A0A374TT20	Prophage_tail domain-containing protein	NA
UHGV-0161321_30	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0161321_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0161321_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0161321_30	COG	COG4926	Phage-related protein	NA
UHGV-0161321_30	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0161321_31	eggNOG-mapper	445975.COLSTE_02152	NA	NA
UHGV-0161321_32	PHROG	phrog_19280	NA	unknown function
UHGV-0161321_32	UniRef90	UniRef90_A0A414EU89	NA	NA
UHGV-0161321_32	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0161321_32	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0161321_32	Structural annotation	PF10651	NA	NA
UHGV-0161321_33	PHROG	phrog_17147	NA	unknown function
UHGV-0161321_33	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0161321_33	eggNOG-mapper	1680.BADO_1222	NA	NA
UHGV-0161321_33	Structural annotation	PF21430	NA	NA
UHGV-0161321_34	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0161321_34	UniRef90	UniRef90_UPI001314FADB	RNA-directed DNA polymerase	NA
UHGV-0161321_34	eggNOG-mapper	457412.RSAG_01111	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0161321_34	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0161321_36	PHROG	phrog_199	holin	lysis
UHGV-0161321_36	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-0161321_36	eggNOG-mapper	1111121.HMPREF1247_0856	Bacteriophage holin family	NA
UHGV-0161321_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161321_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0161321_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161321_37	UniRef90	UniRef90_A0A414EUJ7	Peptidase_C39_2 domain-containing protein	NA
UHGV-0161321_37	eggNOG-mapper	1219626.HMPREF1639_05830	Papain-like cysteine protease AvrRpt2	NA
UHGV-0161321_37	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0161321_37	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0161321_37	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-0161321_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0161321_38	PHROG	phrog_291	endolysin	lysis
UHGV-0161321_38	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-0161321_38	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0161321_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0161321_38	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0161321_38	COG	COG1388	LysM repeat	NA
UHGV-0161321_38	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0161321_39	eggNOG-mapper	1203602.HMPREF1527_01098	NA	NA