UHGV-0161323

Genome information

Genome length 27,839 bps

CDS count 42

Completeness 80.93% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161323
vOTU ID	vOTU-022229
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_499423
BioSample	SAMN06110101
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.63
Jumbo phage	No

Genome content
Genome length	27,839 bps
GC content	39.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.34%
Average CDS length	611.14 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161323_4	PHROG	phrog_24490	NA	unknown function
UHGV-0161323_4	eggNOG-mapper	1273103.NM10_03221	NA	NA
UHGV-0161323_6	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0161323_6	PHROG	phrog_216	integrase	integration and excision
UHGV-0161323_6	UniRef90	UniRef90_A0A412PAR7	Tyr recombinase domain-containing protein	NA
UHGV-0161323_6	eggNOG-mapper	706433.HMPREF9430_01277	DNA integration	NA
UHGV-0161323_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161323_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161323_6	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0161323_7	PHROG	phrog_236	nucleotide kinase	other
UHGV-0161323_7	UniRef90	UniRef90_A0A1C5MWI7	NA	NA
UHGV-0161323_7	eggNOG-mapper	742733.HMPREF9469_05075	NA	NA
UHGV-0161323_7	Pfam	PF11753	NA	DUF3310
UHGV-0161323_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161323_10	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0161323_11	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161323_11	UniRef90	UniRef90_E7MP00	HNH endonuclease domain protein	NA
UHGV-0161323_11	eggNOG-mapper	706433.HMPREF9430_01271	HNH endonuclease domain protein	NA
UHGV-0161323_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0161323_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161323_11	Structural annotation	PF01844	NA	NA
UHGV-0161323_12	PHROG	phrog_104	portal protein	head and packaging
UHGV-0161323_12	UniRef90	UniRef90_A0A890GW77	Phage portal protein	NA
UHGV-0161323_12	eggNOG-mapper	706433.HMPREF9430_01270	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0161323_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0161323_13	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0161323_13	eggNOG-mapper	1321784.HMPREF1987_01068	cell adhesion	NA
UHGV-0161323_13	COG	COG2369	NA	NA
UHGV-0161323_13	Structural annotation	PF14076	NA	NA
UHGV-0161323_14	UniRef90	UniRef90_R6QRM6	Minor capsid protein	NA
UHGV-0161323_14	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0161323_16	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0161323_19	PHROG	phrog_17688	NA	unknown function
UHGV-0161323_19	UniRef90	UniRef90_E7MNZ6	Putative phage terminase, large subunit	NA
UHGV-0161323_19	eggNOG-mapper	706433.HMPREF9430_01267	phage terminase, large subunit	NA
UHGV-0161323_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161323_19	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0161323_20	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0161323_20	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0161323_20	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0161323_20	Pfam	PF14265	NA	DUF4355
UHGV-0161323_20	Structural annotation	PF14265	NA	NA
UHGV-0161323_21	PHROG	phrog_32396	NA	unknown function
UHGV-0161323_21	UniRef90	UniRef90_A0A7X2NQN8	Phage major capsid protein	NA
UHGV-0161323_21	eggNOG-mapper	706433.HMPREF9430_01265	Phage capsid family	NA
UHGV-0161323_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161323_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0161323_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161323_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0161323_23	UniRef90	UniRef90_UPI000C83D02F	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0161323_23	eggNOG-mapper	706433.HMPREF9430_01264	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0161323_23	Pfam	PF09355	NA	Phage_Gp19
UHGV-0161323_23	Structural annotation	PF09355	NA	NA
UHGV-0161323_24	PHROG	phrog_501	head closure Hc1	connector
UHGV-0161323_24	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0161323_24	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0161323_24	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0161323_25	PHROG	phrog_387	neck protein	connector
UHGV-0161323_25	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0161323_25	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0161323_26	PHROG	phrog_123	tail terminator	connector
UHGV-0161323_26	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0161323_26	Structural annotation	PF06141	NA	NA
UHGV-0161323_27	PHROG	phrog_117	major tail protein	tail
UHGV-0161323_27	UniRef90	UniRef90_A0A6L5X9Z3	Phage tail protein	NA
UHGV-0161323_27	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0161323_27	COG	COG5492	NA	NA
UHGV-0161323_27	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0161323_28	PHROG	phrog_1526	NA	unknown function
UHGV-0161323_29	PHROG	phrog_1633	NA	unknown function
UHGV-0161323_29	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0161323_29	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0161323_29	Structural annotation	PF17318	NA	NA
UHGV-0161323_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0161323_30	UniRef90	UniRef90_A0A1C6EH41	Phage-related protein	NA
UHGV-0161323_30	eggNOG-mapper	12390.Q77MU4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0161323_30	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0161323_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0161323_31	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0161323_31	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0161323_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0161323_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0161323_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0161323_32	UniRef90	UniRef90_A0A890GYC9	Phage tail protein	NA
UHGV-0161323_32	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0161323_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0161323_32	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0161323_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0161323_32	COG	COG4926	Phage-related protein	NA
UHGV-0161323_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0161323_33	PHROG	phrog_18627	tail protein	tail
UHGV-0161323_33	UniRef90	UniRef90_A0A139N0H6	Phage capsid and scaffold	NA
UHGV-0161323_33	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-0161323_33	Pfam	PF05895	NA	DUF859
UHGV-0161323_33	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0161323_34	PHROG	phrog_17147	NA	unknown function
UHGV-0161323_34	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0161323_34	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0161323_34	Structural annotation	PF10651	NA	NA
UHGV-0161323_35	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0161323_35	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0161323_35	UniRef90	UniRef90_UPI0014355D5D	RNA-directed DNA polymerase	NA
UHGV-0161323_35	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0161323_35	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0161323_35	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0161323_35	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0161323_35	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0161323_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0161323_39	PHROG	phrog_291	endolysin	lysis
UHGV-0161323_39	UniRef90	UniRef90_A0A3F3PBL6	LysM domain-containing protein	NA
UHGV-0161323_39	eggNOG-mapper	1235798.C817_00299	family 25	NA
UHGV-0161323_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0161323_39	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0161323_39	Pfam	PF01476	LysM domain	LysM
UHGV-0161323_39	COG	COG1388	LysM repeat	NA
UHGV-0161323_39	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0161323_40	eggNOG-mapper	445971.ANASTE_00732	NA	NA
UHGV-0161323_41	PHROG	phrog_33625	holin	lysis
UHGV-0161323_41	UniRef90	UniRef90_UPI00137381C3	phage holin	NA
UHGV-0161323_41	eggNOG-mapper	1385512.N784_12970	Bacteriophage holin	NA
UHGV-0161323_41	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0161323_41	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0161323_41	COG	COG5546	NA	NA
UHGV-0161323_41	Structural annotation	COG5546	NA	NA
UHGV-0161323_42	KOfam	K03575	mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]	NA
UHGV-0161323_42	UniRef90	UniRef90_E7MLI1	Adenine DNA glycosylase	NA
UHGV-0161323_42	eggNOG-mapper	706433.HMPREF9430_00290	A G-specific adenine glycosylase	NA
UHGV-0161323_42	PADLOC	NEase_II_00007	Type II nicking endonuclease	RM
UHGV-0161323_42	Pfam	PF00730	HhH-GPD superfamily base excision DNA repair protein	HhH-GPD
UHGV-0161323_42	Pfam	PF14815	NUDIX domain	NUDIX_4
UHGV-0161323_42	COG	COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	NA