UHGV-0161356

Genome information

Genome length 34,357 bps

CDS count 51

Completeness 68.76% (medium-quality)

geNomad score 0.9563

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161356
vOTU ID	vOTU-027794
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480739
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9563
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.35
Jumbo phage	No

Genome content
Genome length	34,357 bps
GC content	58.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	87.42%
Average CDS length	591.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161356_1	KOfam	K14059	int; integrase	NA
UHGV-0161356_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0161356_1	UniRef90	UniRef90_UPI001D0A8CA0	integrase arm-type DNA-binding domain-containing protein	NA
UHGV-0161356_1	eggNOG-mapper	563192.HMPREF0179_01778	Belongs to the 'phage' integrase family	NA
UHGV-0161356_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0161356_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161356_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161356_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0161356_2	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0161356_2	UniRef90	UniRef90_UPI001EDB0B80	AlpA family phage regulatory protein	NA
UHGV-0161356_2	eggNOG-mapper	639282.DEFDS_0278	DNA excision	NA
UHGV-0161356_2	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0161356_3	UniRef90	UniRef90_UPI000495C941	MBL fold metallo-hydrolase	NA
UHGV-0161356_3	eggNOG-mapper	1408428.JNJP01000133_gene2465	Beta-lactamase superfamily domain	NA
UHGV-0161356_3	Pfam	PF13483	Beta-lactamase superfamily domain	Lactamase_B_3
UHGV-0161356_3	COG	COG2220	L-ascorbate lactonase UlaG, metallo-beta-lactamase superfamily	NA
UHGV-0161356_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0161356_6	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0161356_6	UniRef90	UniRef90_UPI001ED9CE6D	DNA cytosine methyltransferase	NA
UHGV-0161356_6	eggNOG-mapper	1354722.JQLS01000008_gene1472	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0161356_6	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0161356_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161356_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161356_6	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0161356_7	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0161356_7	UniRef90	UniRef90_A0A8B3A5C7	NA	NA
UHGV-0161356_7	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0161356_7	Pfam	PF14359	NA	DUF4406
UHGV-0161356_7	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0161356_8	eggNOG-mapper	1408428.JNJP01000133_gene2463	NA	NA
UHGV-0161356_9	UniRef90	UniRef90_A0A7W8C1M3	DNA-directed RNA polymerase subunit RPC12/RpoP	NA
UHGV-0161356_9	eggNOG-mapper	563192.HMPREF0179_01771	NA	NA
UHGV-0161356_10	PHROG	phrog_674	NA	unknown function
UHGV-0161356_10	UniRef90	UniRef90_UPI0013EE3DEB	NA	NA
UHGV-0161356_10	eggNOG-mapper	563192.HMPREF0179_01770	NA	NA
UHGV-0161356_10	Pfam	PF07083	NA	DUF1351
UHGV-0161356_10	Structural annotation	PF07083	NA	NA
UHGV-0161356_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161356_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161356_11	UniRef90	UniRef90_E5Y6F6	Single-stranded DNA-binding protein	NA
UHGV-0161356_11	eggNOG-mapper	563192.HMPREF0179_01769	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0161356_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161356_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0161356_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161356_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0161356_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0161356_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161356_12	UniRef90	UniRef90_F0RWM9	ERF family protein	NA
UHGV-0161356_12	eggNOG-mapper	563192.HMPREF0179_01768	ERF superfamily	NA
UHGV-0161356_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0161356_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161356_17	UniRef90	UniRef90_UPI001C3A936A	NA	NA
UHGV-0161356_17	eggNOG-mapper	563192.HMPREF0179_01765	NA	NA
UHGV-0161356_17	Pfam	PF10387	NA	DUF2442
UHGV-0161356_18	UniRef90	UniRef90_UPI001C3C13C2	NA	NA
UHGV-0161356_18	eggNOG-mapper	1408428.JNJP01000135_gene3788	NA	NA
UHGV-0161356_18	Pfam	PF13711	NA	DUF4160
UHGV-0161356_18	Structural annotation	PF13711	NA	NA
UHGV-0161356_20	UniRef90	UniRef90_A0A1B7XEK5	Amino acid-binding protein	NA
UHGV-0161356_20	eggNOG-mapper	563192.HMPREF0179_01762	NA	NA
UHGV-0161356_20	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0161356_20	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0161356_22	PHROG	phrog_7995	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0161356_22	UniRef90	UniRef90_UPI000552DF5B	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0161356_22	eggNOG-mapper	1304872.JAGC01000009_gene787	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0161356_22	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0161356_22	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0161356_22	Structural annotation	PF05014, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0161356_23	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0161356_23	UniRef90	UniRef90_UPI001D0A93D8	S24/S26 family peptidase	NA
UHGV-0161356_23	eggNOG-mapper	883.DvMF_1678	Peptidase S24-like	NA
UHGV-0161356_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161356_23	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0161356_23	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0161356_24	Structural annotation	PF20800	NA	NA
UHGV-0161356_25	UniRef90	UniRef90_E5Y6A6	HTH_11 domain-containing protein	NA
UHGV-0161356_25	eggNOG-mapper	563192.HMPREF0179_01757	NA	NA
UHGV-0161356_25	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0161356_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0161356_26	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0161356_26	UniRef90	UniRef90_E5Y6E3	Anti-repressor protein	NA
UHGV-0161356_26	eggNOG-mapper	1408428.JNJP01000132_gene2355	Phage antirepressor protein KilAC domain	NA
UHGV-0161356_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0161356_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0161356_26	COG	COG3617	Prophage antirepressor	NA
UHGV-0161356_26	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0161356_27	UniRef90	UniRef90_UPI001EDB188E	RNA helicase	NA
UHGV-0161356_28	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0161356_28	UniRef90	UniRef90_UPI001D09F98A	helix-turn-helix domain-containing protein	NA
UHGV-0161356_28	eggNOG-mapper	563192.HMPREF0179_01754	DnaD domain protein	NA
UHGV-0161356_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0161356_28	Structural annotation	PF07106, TIGR01610, COG0735	NA	NA
UHGV-0161356_29	PHROG	phrog_824	NA	unknown function
UHGV-0161356_29	UniRef90	UniRef90_G1UY34	VRR-NUC domain-containing protein	NA
UHGV-0161356_29	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-0161356_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0161356_32	UniRef90	UniRef90_A0A7W8C3T8	Transposase	NA
UHGV-0161356_32	eggNOG-mapper	411464.DESPIG_01300	NA	NA
UHGV-0161356_33	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0161356_33	PHROG	phrog_894	endolysin	lysis
UHGV-0161356_33	UniRef90	UniRef90_E5Y6D6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0161356_33	eggNOG-mapper	1408428.JNJP01000030_gene968	Peptidase M15	NA
UHGV-0161356_33	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0161356_33	COG	COG3108	NA	NA
UHGV-0161356_33	Structural annotation	PF08291, NF007557, COG3108	NA	NA
UHGV-0161356_34	eggNOG-mapper	457398.HMPREF0326_01528	NA	NA
UHGV-0161356_36	eggNOG-mapper	457398.HMPREF0326_02526	NA	NA
UHGV-0161356_37	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0161356_37	UniRef90	UniRef90_UPI00193DD0E5	helix-turn-helix domain-containing protein	NA
UHGV-0161356_37	eggNOG-mapper	563192.HMPREF0179_01745	NA	NA
UHGV-0161356_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161356_38	PHROG	phrog_2472	NA	unknown function
UHGV-0161356_38	UniRef90	UniRef90_A0A516L582	Putative terminase-like family protein	NA
UHGV-0161356_38	eggNOG-mapper	563192.HMPREF0179_01744	Terminase RNaseH-like domain	NA
UHGV-0161356_38	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0161356_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161356_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-0161356_39	UniRef90	UniRef90_A0A6M3IH02	Putative portal protein	NA
UHGV-0161356_39	eggNOG-mapper	563192.HMPREF0179_01743	Tfp pilus assembly protein FimV	NA
UHGV-0161356_39	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0161356_39	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0161356_40	eggNOG-mapper	563192.HMPREF0179_01741	NA	NA
UHGV-0161356_41	PHROG	phrog_334	major head protein	head and packaging
UHGV-0161356_41	UniRef90	UniRef90_UPI000425C9C5	N4-gp56 family major capsid protein	NA
UHGV-0161356_41	eggNOG-mapper	563192.HMPREF0179_01740	NA	NA
UHGV-0161356_41	Pfam	PF13252	NA	DUF4043
UHGV-0161356_41	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0161356_41	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161356_44	PHROG	phrog_399	structural protein	head and packaging
UHGV-0161356_44	UniRef90	UniRef90_A0A1K1LD89	Conserved phage protein	NA
UHGV-0161356_44	eggNOG-mapper	1408428.JNJP01000030_gene956	NA	NA
UHGV-0161356_44	Pfam	PF20387	NA	DUF6682
UHGV-0161356_44	Structural annotation	PF20387	NA	NA
UHGV-0161356_45	PHROG	phrog_437	virion structural protein	head and packaging
UHGV-0161356_45	eggNOG-mapper	1408428.JNJP01000030_gene955	NA	NA
UHGV-0161356_45	Structural annotation	PF20387, TIGR02215	NA	NA
UHGV-0161356_46	UniRef90	UniRef90_UPI0006901D1E	pyocin knob domain-containing protein	NA
UHGV-0161356_46	eggNOG-mapper	1408428.JNJP01000030_gene954	NA	NA
UHGV-0161356_46	COG	COG5563	NA	NA
UHGV-0161356_47	PHROG	phrog_2618	NA	unknown function
UHGV-0161356_47	eggNOG-mapper	1408428.JNJP01000030_gene953	NA	NA
UHGV-0161356_48	PHROG	phrog_3342	NA	unknown function
UHGV-0161356_48	UniRef90	UniRef90_UPI001D0BA9B1	pseudouridine synthase	NA
UHGV-0161356_48	eggNOG-mapper	563192.HMPREF0179_03263	NA	NA
UHGV-0161356_49	UniRef90	UniRef90_G1V546	HTH cro/C1-type domain-containing protein	NA
UHGV-0161356_49	eggNOG-mapper	1408428.JNJP01000030_gene940	NA	NA
UHGV-0161356_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161356_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161356_51	UniRef90	UniRef90_UPI00049843AA	HTH domain-containing protein	NA
UHGV-0161356_51	eggNOG-mapper	1408428.JNJP01000030_gene940	NA	NA
UHGV-0161356_51	Pfam	PF13560	Helix-turn-helix domain	HTH_31