UHGV-0161409

Genome information

Genome length 15,555 bps

CDS count 18

Completeness 86.59% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161409
vOTU ID	vOTU-028037
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_488301
BioSample	SAMN06110316
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.06
Jumbo phage	No

Genome content
Genome length	15,555 bps
GC content	54.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	95.03%
Average CDS length	827.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161409_1	PHROG	phrog_12298	membrane associated protein	moron, auxiliary metabolic gene and host takeover
UHGV-0161409_1	eggNOG-mapper	1096756.ATKN01000008_gene1301	Peptidoglycan-binding domain 1 protein	NA
UHGV-0161409_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0161409_2	PHROG	phrog_199	holin	lysis
UHGV-0161409_2	UniRef90	UniRef90_UPI00123224AD	phage holin family protein	NA
UHGV-0161409_2	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0161409_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161409_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0161409_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161409_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0161409_3	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0161409_3	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0161409_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0161409_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161409_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-0161409_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0161409_4	Structural annotation	TIGR02219	NA	NA
UHGV-0161409_5	Structural annotation	PF08931	NA	NA
UHGV-0161409_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0161409_7	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0161409_7	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0161409_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-0161409_8	UniRef90	UniRef90_A0A3G3LXU8	Upper collar protein	NA
UHGV-0161409_8	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0161409_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0161409_8	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0161409_9	PHROG	phrog_2248	tail protein	tail
UHGV-0161409_9	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0161409_9	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0161409_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0161409_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0161409_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0161409_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0161409_10	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0161409_10	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0161409_10	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0161409_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0161409_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0161409_12	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0161409_12	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0161409_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0161409_12	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0161409_13	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0161409_14	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161409_14	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0161409_14	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0161409_14	Structural annotation	PF17427	NA	NA
UHGV-0161409_15	Structural annotation	PF17548, MF_00273	NA	NA