UHGV-0161485

Genome information

vOTU vOTU-019628

Genome length 37,764 bps

CDS count 70

Completeness 88.71% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161485
vOTU ID	vOTU-019628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449731
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.17
Jumbo phage	No

Genome content
Genome length	37,764 bps
GC content	45.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	87.59%
Average CDS length	476.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161485_2	PHROG	phrog_521	tail protein	tail
UHGV-0161485_2	UniRef90	UniRef90_A0A174R4L0	Phage-like element pbsx protein xkdT	NA
UHGV-0161485_2	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0161485_2	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0161485_2	COG	COG3778	NA	NA
UHGV-0161485_2	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-0161485_3	PHROG	phrog_30004	NA	unknown function
UHGV-0161485_3	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0161485_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0161485_5	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0161485_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0161485_5	UniRef90	UniRef90_A0A174XRM9	Integrase	NA
UHGV-0161485_5	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0161485_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0161485_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161485_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0161485_5	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0161485_6	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0161485_6	UniRef90	UniRef90_A0A413VL88	Acyl carrier protein	NA
UHGV-0161485_6	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0161485_6	Structural annotation	PF14301	NA	NA
UHGV-0161485_7	PHROG	phrog_20274	NA	unknown function
UHGV-0161485_7	UniRef90	UniRef90_A0A174MAK4	Membrane protein	NA
UHGV-0161485_7	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0161485_7	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0161485_7	COG	COG4905	NA	NA
UHGV-0161485_7	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0161485_8	PHROG	phrog_199	holin	lysis
UHGV-0161485_8	UniRef90	UniRef90_D3AUA6	Toxin secretion/phage lysis holin	NA
UHGV-0161485_8	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-0161485_8	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161485_8	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0161485_8	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161485_9	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0161485_9	PHROG	phrog_3088	amidase	lysis
UHGV-0161485_9	UniRef90	UniRef90_A0A174XN03	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0161485_9	eggNOG-mapper	1151292.QEW_0991	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0161485_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0161485_9	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0161485_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0161485_9	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0161485_10	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0161485_10	UniRef90	UniRef90_D3AUA1	Bro-N domain-containing protein (Fragment)	NA
UHGV-0161485_10	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0161485_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0161485_10	COG	COG3617	Prophage antirepressor	NA
UHGV-0161485_10	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0161485_13	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0161485_13	PHROG	phrog_95	integrase	integration and excision
UHGV-0161485_13	UniRef90	UniRef90_D3AFE7	Resolvase, N-terminal domain protein	NA
UHGV-0161485_13	eggNOG-mapper	1298920.KI911353_gene3266	Resolvase, N terminal domain	NA
UHGV-0161485_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0161485_13	Pfam	PF07508	Recombinase	Recombinase
UHGV-0161485_13	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0161485_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0161485_13	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0161485_14	PHROG	phrog_29304	NA	unknown function
UHGV-0161485_14	UniRef90	UniRef90_A0A413LT97	Type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-0161485_14	eggNOG-mapper	97139.C824_03487	NA	NA
UHGV-0161485_14	Pfam	PF15731	Antitoxin component of bacterial toxin-antitoxin system, MqsA	MqsA_antitoxin
UHGV-0161485_14	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0161485_14	Structural annotation	PF14122, TIGR03829	NA	NA
UHGV-0161485_15	UniRef90	UniRef90_A0A413LTJ2	NA	NA
UHGV-0161485_15	eggNOG-mapper	397290.C810_03288	NA	NA
UHGV-0161485_15	Pfam	PF14076	NA	DUF4258
UHGV-0161485_15	Structural annotation	PF14076, TIGR02683, COG2929	NA	NA
UHGV-0161485_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0161485_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0161485_16	UniRef90	UniRef90_A0A413LTA6	S24 family peptidase	NA
UHGV-0161485_16	eggNOG-mapper	1232453.BAIF02000027_gene4195	Peptidase S24-like	NA
UHGV-0161485_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161485_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0161485_16	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0161485_16	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, NF007257, COG2932, COG1396	NA	NA
UHGV-0161485_17	UniRef90	UniRef90_A0A414AJT8	NA	NA
UHGV-0161485_17	eggNOG-mapper	1159488.SEQMU2_01590	NA	NA
UHGV-0161485_17	Pfam	PF05339	NA	DUF739
UHGV-0161485_17	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0161485_17	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0161485_18	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0161485_18	UniRef90	UniRef90_D3AFE1	Phage regulatory protein, Rha family	NA
UHGV-0161485_18	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-0161485_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0161485_18	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0161485_18	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0161485_18	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0161485_19	eggNOG-mapper	610130.Closa_2884	NA	NA
UHGV-0161485_23	PHROG	phrog_1090	NA	unknown function
UHGV-0161485_23	UniRef90	UniRef90_UPI001B0A63A4	CRISPR-associated protein Cas2	NA
UHGV-0161485_23	eggNOG-mapper	1294142.CINTURNW_1658	NA	NA
UHGV-0161485_23	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0161485_26	UniRef90	UniRef90_A0A374PBQ3	Trigger factor	NA
UHGV-0161485_26	eggNOG-mapper	1304866.K413DRAFT_0829	NA	NA
UHGV-0161485_27	UniRef90	UniRef90_A0A374P9F4	Phosphatase	NA
UHGV-0161485_27	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-0161485_28	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161485_28	UniRef90	UniRef90_A0A1C5TE45	AAA domain-containing protein	NA
UHGV-0161485_28	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0161485_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161485_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161485_29	PHROG	phrog_18107	NA	unknown function
UHGV-0161485_29	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0161485_29	Structural annotation	PF05037	NA	NA
UHGV-0161485_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0161485_30	UniRef90	UniRef90_R6V942	ERCC4 domain-containing protein	NA
UHGV-0161485_30	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0161485_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0161485_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0161485_31	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0161485_31	PHROG	phrog_11992	NA	unknown function
UHGV-0161485_31	UniRef90	UniRef90_D3ASX6	CHC2 zinc finger domain protein	NA
UHGV-0161485_31	eggNOG-mapper	1304866.K413DRAFT_0824	CHC2 zinc finger	NA
UHGV-0161485_31	PADLOC	drt-UG29	DRT	DRT
UHGV-0161485_31	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0161485_31	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0161485_31	Structural annotation	PF01807	NA	NA
UHGV-0161485_32	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0161485_32	UniRef90	UniRef90_A0A3E2U7B1	NA	NA
UHGV-0161485_32	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-0161485_32	Pfam	PF06048	NA	DUF927
UHGV-0161485_32	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0161485_32	COG	COG5519	NA	NA
UHGV-0161485_32	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0161485_40	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0161485_40	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0161485_40	UniRef90	UniRef90_A0A174WGT9	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0161485_40	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0161485_40	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0161485_40	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0161485_40	COG	COG0338	DNA-adenine methylase	NA
UHGV-0161485_40	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0161485_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0161485_41	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0161485_41	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0161485_41	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0161485_41	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0161485_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161485_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161485_41	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0161485_42	PHROG	phrog_8538	NA	unknown function
UHGV-0161485_42	eggNOG-mapper	1196322.A370_02189	NA	NA
UHGV-0161485_43	PHROG	phrog_2600	NA	unknown function
UHGV-0161485_43	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0161485_46	UniRef90	UniRef90_A0A413WS40	Ribbon-helix-helix protein, CopG family	NA
UHGV-0161485_46	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0161485_47	eggNOG-mapper	742733.HMPREF9469_06064	NA	NA
UHGV-0161485_48	UniRef90	UniRef90_UPI00164D7607	NA	NA
UHGV-0161485_49	Structural annotation	PF14192	NA	NA
UHGV-0161485_50	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0161485_50	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0161485_50	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0161485_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161485_51	UniRef90	UniRef90_A0A413WR36	RNA polymerase subunit sigma-70	NA
UHGV-0161485_51	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0161485_51	Structural annotation	PF02996	NA	NA
UHGV-0161485_53	PHROG	phrog_21589	NA	unknown function
UHGV-0161485_53	UniRef90	UniRef90_UPI001375F211	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0161485_53	eggNOG-mapper	431943.CKL_0478	NA	NA
UHGV-0161485_53	AcrCatalog	cluster_7454	NA	NA
UHGV-0161485_53	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0161485_55	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0161485_55	UniRef90	UniRef90_A0A6N3EQE1	ATPase subunit of terminase (GpP-like)	NA
UHGV-0161485_55	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0161485_55	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0161485_55	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0161485_55	COG	COG5484	NA	NA
UHGV-0161485_55	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0161485_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161485_56	PHROG	phrog_10250	NA	unknown function
UHGV-0161485_56	UniRef90	UniRef90_A0A174R281	Phage terminase, large subunit, PBSX family	NA
UHGV-0161485_56	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0161485_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161485_56	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0161485_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161485_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161485_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161485_57	PHROG	phrog_64	portal protein	head and packaging
UHGV-0161485_57	UniRef90	UniRef90_A0A174IHP1	Phage portal protein, SPP1 family	NA
UHGV-0161485_57	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0161485_57	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0161485_57	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0161485_58	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0161485_58	UniRef90	UniRef90_D3AJ33	Phage protein F-like protein	NA
UHGV-0161485_58	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0161485_58	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0161485_58	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0161485_58	COG	COG2369	NA	NA
UHGV-0161485_58	Structural annotation	TIGR01641	NA	NA
UHGV-0161485_60	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161485_60	UniRef90	UniRef90_D9R920	Minor structural GP20 protein	NA
UHGV-0161485_60	eggNOG-mapper	610130.Closa_1394	Phage minor structural protein GP20	NA
UHGV-0161485_60	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161485_60	Structural annotation	PF06810	NA	NA
UHGV-0161485_61	PHROG	phrog_247	major head protein	head and packaging
UHGV-0161485_61	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0161485_61	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0161485_61	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0161485_61	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0161485_62	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0161485_62	PHROG	phrog_11157	NA	unknown function
UHGV-0161485_62	UniRef90	UniRef90_D3ABG9	Big_13 domain-containing protein	NA
UHGV-0161485_62	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0161485_62	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0161485_62	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0161485_62	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0161485_63	PHROG	phrog_32322	NA	unknown function
UHGV-0161485_63	UniRef90	UniRef90_UPI00164D9DD8	PF13754 domain-containing protein	NA
UHGV-0161485_63	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0161485_63	Pfam	PF13754	NA	Big_3_4
UHGV-0161485_63	Structural annotation	PF13754	NA	NA
UHGV-0161485_64	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0161485_64	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0161485_66	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0161485_66	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0161485_66	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0161485_66	Structural annotation	PF05135	NA	NA
UHGV-0161485_67	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0161485_67	UniRef90	UniRef90_UPI00164AF442	ABC transporter ATP-binding protein	NA
UHGV-0161485_67	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-0161485_67	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0161485_68	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0161485_68	UniRef90	UniRef90_A0A174IIP2	Bacteriophage protein	NA
UHGV-0161485_68	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0161485_68	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0161485_68	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0161485_69	PHROG	phrog_525	NA	unknown function
UHGV-0161485_69	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-0161485_69	eggNOG-mapper	318464.IO99_00610	NA	NA
UHGV-0161485_69	Pfam	PF20765	NA	DUF6838
UHGV-0161485_69	Structural annotation	PF20765	NA	NA
UHGV-0161485_70	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA