UHGV-0161572

Genome information

Genome length 34,990 bps

CDS count 52

Completeness 96.79% (high-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161572
vOTU ID	vOTU-073371
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460737
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.88
Jumbo phage	No

Genome content
Genome length	34,990 bps
GC content	39.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.05%
Average CDS length	610.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161572_1	PHROG	phrog_5783	NA	unknown function
UHGV-0161572_1	UniRef90	UniRef90_UPI00164BA09D	NYN domain-containing protein	NA
UHGV-0161572_1	eggNOG-mapper	864563.HMPREF9166_1292	NYN domain	NA
UHGV-0161572_1	Pfam	PF01936	NYN domain	NYN
UHGV-0161572_1	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0161572_1	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0161572_2	PHROG	phrog_16228	NA	unknown function
UHGV-0161572_2	UniRef90	UniRef90_UPI001570061B	Uma2 family endonuclease	NA
UHGV-0161572_2	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0161572_2	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0161572_2	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0161572_2	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0161572_5	PHROG	phrog_87	metallo-protease	other
UHGV-0161572_5	UniRef90	UniRef90_A0A415UM51	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0161572_5	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0161572_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161572_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0161572_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161572_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161572_6	UniRef90	UniRef90_UPI0015D169CD	helix-turn-helix domain-containing protein	NA
UHGV-0161572_6	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161572_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161572_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161572_7	UniRef90	UniRef90_UPI001A9C15D9	helix-turn-helix domain-containing protein	NA
UHGV-0161572_7	eggNOG-mapper	536233.CLO_0858	Helix-turn-helix	NA
UHGV-0161572_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161572_7	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0161572_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0161572_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0161572_8	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-0161572_8	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0161572_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0161572_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0161572_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0161572_8	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0161572_10	PHROG	phrog_32342	NA	unknown function
UHGV-0161572_12	PHROG	phrog_3777	NA	unknown function
UHGV-0161572_12	UniRef90	UniRef90_A0A3E5EKG6	NA	NA
UHGV-0161572_12	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0161572_12	Pfam	PF12957	NA	DUF3846
UHGV-0161572_12	Structural annotation	PF12957	NA	NA
UHGV-0161572_15	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0161572_15	PHROG	phrog_5889	NA	unknown function
UHGV-0161572_15	UniRef90	UniRef90_A0A1C5SNQ8	Predicted HD-superfamily hydrolase	NA
UHGV-0161572_15	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0161572_15	Pfam	PF01966	HD domain	HD
UHGV-0161572_15	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0161572_15	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0161572_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161572_16	UniRef90	UniRef90_A0A1C5SND3	AAA domain-containing protein	NA
UHGV-0161572_16	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0161572_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161572_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161572_17	PHROG	phrog_18107	NA	unknown function
UHGV-0161572_17	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0161572_17	Structural annotation	PF05037	NA	NA
UHGV-0161572_18	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0161572_18	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0161572_18	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0161572_18	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0161572_18	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0161572_19	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0161572_19	PHROG	phrog_11992	NA	unknown function
UHGV-0161572_19	UniRef90	UniRef90_A0A3E5EKI6	DNA primase	NA
UHGV-0161572_19	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0161572_19	PADLOC	drt-UG29	DRT	DRT
UHGV-0161572_19	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0161572_19	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0161572_19	Structural annotation	PF01807	NA	NA
UHGV-0161572_20	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0161572_20	UniRef90	UniRef90_A0A1C5SNN8	Superfamily II helicase and inactivated derivatives	NA
UHGV-0161572_20	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0161572_20	Pfam	PF06048	NA	DUF927
UHGV-0161572_20	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0161572_20	COG	COG5519	NA	NA
UHGV-0161572_20	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0161572_21	PHROG	phrog_23374	NA	unknown function
UHGV-0161572_22	PHROG	phrog_3253	NA	unknown function
UHGV-0161572_22	UniRef90	UniRef90_A0A355KVS1	Resolvase	NA
UHGV-0161572_22	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0161572_23	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0161572_24	PHROG	phrog_26445	NA	unknown function
UHGV-0161572_24	UniRef90	UniRef90_A0A3E5GSS3	DNA-binding response regulator	NA
UHGV-0161572_24	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0161572_24	Structural annotation	PF00196	NA	NA
UHGV-0161572_25	PHROG	phrog_15198	NA	unknown function
UHGV-0161572_25	UniRef90	UniRef90_B0G4G8	NA	NA
UHGV-0161572_25	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0161572_25	Pfam	PF04448	NA	DUF551
UHGV-0161572_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0161572_26	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0161572_26	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0161572_26	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0161572_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0161572_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0161572_26	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0161572_28	PHROG	phrog_32748	NA	unknown function
UHGV-0161572_28	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-0161572_28	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0161572_29	PHROG	phrog_31991	NA	unknown function
UHGV-0161572_30	PHROG	phrog_7024	NA	unknown function
UHGV-0161572_30	eggNOG-mapper	693746.OBV_41700	NA	NA
UHGV-0161572_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161572_31	UniRef90	UniRef90_R6S8T9	Sigma70_r4 domain-containing protein	NA
UHGV-0161572_31	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0161572_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0161572_31	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0161572_34	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0161572_34	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0161572_34	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0161572_35	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0161572_35	eggNOG-mapper	1235798.C817_04580	HNH nucleases	NA
UHGV-0161572_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161572_36	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0161572_36	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0161572_36	eggNOG-mapper	913865.DOT_5637	phage terminase small subunit	NA
UHGV-0161572_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0161572_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0161572_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0161572_37	UniRef90	UniRef90_A0A3E5GPH3	Terminase large subunit	NA
UHGV-0161572_37	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0161572_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0161572_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0161572_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161572_37	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0161572_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0161572_38	UniRef90	UniRef90_A0A3E5GPS9	Phage portal protein	NA
UHGV-0161572_38	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0161572_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0161572_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0161572_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0161572_38	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0161572_39	KOfam	K06904	NA	NA
UHGV-0161572_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0161572_39	UniRef90	UniRef90_A0A3E5GPG5	HK97 family phage prohead protease	NA
UHGV-0161572_39	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0161572_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0161572_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0161572_39	COG	COG3740	Phage head maturation protease	NA
UHGV-0161572_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0161572_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0161572_40	UniRef90	UniRef90_A0A3E5GPH2	Phage major capsid protein	NA
UHGV-0161572_40	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0161572_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161572_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0161572_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0161572_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161572_41	PHROG	phrog_2550	NA	unknown function
UHGV-0161572_41	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0161572_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0161572_42	PHROG	phrog_19734	NA	unknown function
UHGV-0161572_42	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0161572_42	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0161572_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0161572_43	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0161572_43	Structural annotation	PF05657	NA	NA
UHGV-0161572_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0161572_44	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0161572_44	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0161572_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0161572_44	Structural annotation	TIGR01725	NA	NA
UHGV-0161572_45	PHROG	phrog_88	major tail protein	tail
UHGV-0161572_45	UniRef90	UniRef90_A0A3E5GPH8	Phage tail protein	NA
UHGV-0161572_45	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0161572_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0161572_46	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0161572_46	Structural annotation	PF11836	NA	NA
UHGV-0161572_47	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0161572_47	UniRef90	UniRef90_A0A3E5GPN2	PhageMin_Tail domain-containing protein	NA
UHGV-0161572_47	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0161572_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0161572_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0161572_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0161572_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0161572_48	UniRef90	UniRef90_A0A3E5GPI4	Phage tail protein	NA
UHGV-0161572_48	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0161572_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0161572_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0161572_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0161572_49	PHROG	phrog_13289	tail protein	tail
UHGV-0161572_49	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0161572_49	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0161572_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0161572_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0161572_49	COG	COG4926	Phage-related protein	NA
UHGV-0161572_51	PHROG	phrog_16164	NA	unknown function
UHGV-0161572_51	eggNOG-mapper	411476.BACOVA_04955	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0161572_51	Pfam	PF16255	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL_lke
UHGV-0161572_51	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0161572_52	eggNOG-mapper	794903.OPIT5_29910	NA	NA