UHGV-0161682

Genome information

Genome length 25,639 bps

CDS count 42

Completeness 61.99% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161682
vOTU ID	vOTU-028055
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497181
BioSample	SAMN06110166
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.75
Jumbo phage	No

Genome content
Genome length	25,639 bps
GC content	59.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.22%
Average CDS length	567.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161682_1	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0161682_3	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0161682_3	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0161682_3	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0161682_4	PHROG	phrog_12105	NA	unknown function
UHGV-0161682_4	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0161682_5	PHROG	phrog_15239	NA	unknown function
UHGV-0161682_6	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0161682_6	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0161682_6	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0161682_6	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0161682_6	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161682_7	PHROG	phrog_13908	NA	unknown function
UHGV-0161682_7	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0161682_8	KOfam	K07584	NA	NA
UHGV-0161682_8	PHROG	phrog_4478	peptidase	other
UHGV-0161682_8	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-0161682_8	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0161682_8	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0161682_8	COG	COG2868	NA	NA
UHGV-0161682_8	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0161682_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0161682_9	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0161682_9	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0161682_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161682_10	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0161682_10	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0161682_10	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0161682_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161682_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161682_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161682_11	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0161682_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0161682_12	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161682_12	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0161682_12	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0161682_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0161682_12	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0161682_13	PHROG	phrog_474	phosphofructokinase	other
UHGV-0161682_13	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0161682_13	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0161682_13	Pfam	PF19905	NA	DUF6378
UHGV-0161682_13	Structural annotation	PF19905	NA	NA
UHGV-0161682_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0161682_16	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0161682_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0161682_16	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0161682_16	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0161682_19	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0161682_20	PHROG	phrog_3136	NA	unknown function
UHGV-0161682_20	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0161682_20	eggNOG-mapper	388467.A19Y_0909	ASCH domain	NA
UHGV-0161682_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0161682_20	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0161682_21	Pfam	PF04448	NA	DUF551
UHGV-0161682_22	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0161682_22	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0161682_25	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161682_25	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-0161682_25	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0161682_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161682_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161682_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161682_26	UniRef90	UniRef90_G4KXN0	Single-stranded DNA-binding protein	NA
UHGV-0161682_26	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0161682_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161682_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0161682_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161682_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0161682_26	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0161682_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0161682_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161682_27	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0161682_27	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0161682_27	Pfam	PF03837	RecT family	RecT
UHGV-0161682_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0161682_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0161682_27	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0161682_28	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0161682_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161682_29	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-0161682_29	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0161682_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0161682_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0161682_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0161682_29	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0161682_33	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0161682_33	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0161682_35	eggNOG-mapper	1131462.DCF50_p2449	Bacterial Ig-like domain 2	NA
UHGV-0161682_35	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0161682_35	COG	COG5492	NA	NA
UHGV-0161682_36	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-0161682_36	eggNOG-mapper	1321782.HMPREF1986_00318	NA	NA
UHGV-0161682_36	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0161682_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161682_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161682_37	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0161682_37	eggNOG-mapper	928210.CALU01000047_gene122	Helix-turn-helix domain	NA
UHGV-0161682_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161682_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161682_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161682_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0161682_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161682_38	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0161682_38	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-0161682_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0161682_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0161682_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161682_40	KOfam	K14059	int; integrase	NA
UHGV-0161682_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0161682_40	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0161682_40	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0161682_40	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0161682_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161682_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161682_40	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0161682_42	KOfam	K00286	proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]	NA
UHGV-0161682_42	UniRef90	UniRef90_A0A3D1VFF0	Pyrroline-5-carboxylate reductase	NA
UHGV-0161682_42	eggNOG-mapper	657322.FPR_29500	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	NA
UHGV-0161682_42	Pfam	PF03807	NADP oxidoreductase coenzyme F420-dependent	F420_oxidored
UHGV-0161682_42	Pfam	PF14748	Pyrroline-5-carboxylate reductase dimerisation	P5CR_dimer
UHGV-0161682_42	NCBIFam	TIGR00112.1	pyrroline-5-carboxylate reductase	NA
UHGV-0161682_42	COG	COG0345	Pyrroline-5-carboxylate reductase	NA
UHGV-0161682_42	HAMAP	MF_01925	Pyrroline-5-carboxylate reductase [proC]	NA