UHGV-0161716

Genome information

Genome length 35,916 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161716
vOTU ID	vOTU-046313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_480875
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.79
Jumbo phage	No

Genome content
Genome length	35,916 bps
GC content	61.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	88.74%
Average CDS length	571.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161716_2	PHROG	phrog_4105	NA	unknown function
UHGV-0161716_3	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0161716_3	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0161716_4	PHROG	phrog_13256	NA	unknown function
UHGV-0161716_4	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0161716_5	PHROG	phrog_21357	endolysin	lysis
UHGV-0161716_5	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0161716_5	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0161716_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0161716_5	COG	COG1388	LysM repeat	NA
UHGV-0161716_5	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0161716_6	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0161716_6	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0161716_7	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0161716_8	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0161716_8	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161716_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161716_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161716_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0161716_9	AcrCatalog	cluster_39973	NA	NA
UHGV-0161716_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0161716_14	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0161716_14	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0161716_15	KOfam	K14059	int; integrase	NA
UHGV-0161716_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0161716_15	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0161716_15	eggNOG-mapper	1469948.JPNB01000003_gene298	Belongs to the 'phage' integrase family	NA
UHGV-0161716_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161716_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161716_15	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0161716_16	UniRef90	UniRef90_A0A7X6MZX8	NA	NA
UHGV-0161716_16	eggNOG-mapper	1035189.HMPREF9954_0452	NA	NA
UHGV-0161716_16	Pfam	PF05987	NA	DUF898
UHGV-0161716_16	COG	COG4269	NA	NA
UHGV-0161716_17	UniRef90	UniRef90_A0A845RB47	XRE family transcriptional regulator	NA
UHGV-0161716_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161716_17	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0161716_18	Structural annotation	PF09202, MF_01819, NF002926, COG3432	NA	NA
UHGV-0161716_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161716_19	UniRef90	UniRef90_A0A8J6J0T8	Helix-turn-helix transcriptional regulator	NA
UHGV-0161716_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161716_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0161716_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161716_20	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0161716_21	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0161716_21	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0161716_21	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161716_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0161716_21	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0161716_21	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0161716_23	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0161716_23	eggNOG-mapper	1203606.HMPREF1526_01323	Helix-turn-helix domain	NA
UHGV-0161716_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0161716_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0161716_23	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0161716_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0161716_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0161716_24	UniRef90	UniRef90_A0A3D4EGZ7	DNA helicase	NA
UHGV-0161716_24	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0161716_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0161716_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0161716_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0161716_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0161716_25	PHROG	phrog_27610	NA	unknown function
UHGV-0161716_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0161716_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0161716_26	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-0161716_26	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0161716_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-0161716_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0161716_26	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0161716_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0161716_27	PHROG	phrog_27290	NA	unknown function
UHGV-0161716_27	UniRef90	UniRef90_UPI001BB4839F	ParB N-terminal domain-containing protein	NA
UHGV-0161716_27	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0161716_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0161716_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161716_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0161716_27	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0161716_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161716_34	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0161716_34	Structural annotation	PF11726	NA	NA
UHGV-0161716_35	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161716_35	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-0161716_35	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0161716_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0161716_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0161716_35	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0161716_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0161716_36	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0161716_36	UniRef90	UniRef90_UPI00067ECD6A	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0161716_36	eggNOG-mapper	1304284.L21TH_2620	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0161716_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0161716_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0161716_36	COG	COG0863	DNA modification methylase	NA
UHGV-0161716_36	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0161716_37	UniRef90	UniRef90_A0A1V6DKY6	Radical SAM superfamily protein	NA
UHGV-0161716_37	eggNOG-mapper	1121423.JONT01000065_gene1370	radical SAM domain protein	NA
UHGV-0161716_37	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0161716_37	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0161716_37	Structural annotation	PF02310, MF_01864, TIGR03960, COG1032	NA	NA
UHGV-0161716_38	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0161716_38	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0161716_38	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0161716_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0161716_38	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0161716_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0161716_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0161716_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0161716_39	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-0161716_39	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0161716_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0161716_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0161716_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0161716_39	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0161716_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0161716_41	UniRef90	UniRef90_UPI0013EF1526	phage portal protein	NA
UHGV-0161716_41	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0161716_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0161716_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0161716_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0161716_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0161716_42	PHROG	phrog_16951	NA	unknown function
UHGV-0161716_42	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0161716_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0161716_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0161716_43	UniRef90	UniRef90_UPI00195B1FEC	phage major capsid protein	NA
UHGV-0161716_43	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0161716_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0161716_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0161716_43	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0161716_44	UniRef90	UniRef90_UPI0019597439	head-tail connector protein	NA
UHGV-0161716_44	eggNOG-mapper	693746.OBV_20060	NA	NA
UHGV-0161716_44	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0161716_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0161716_45	PHROG	phrog_25	head closure Hc1	connector
UHGV-0161716_45	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0161716_45	eggNOG-mapper	1540257.JQMW01000004_gene414	head-tail adaptor	NA
UHGV-0161716_45	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0161716_45	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0161716_45	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0161716_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0161716_46	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0161716_46	Structural annotation	PF05657	NA	NA
UHGV-0161716_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0161716_47	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0161716_47	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0161716_47	Structural annotation	TIGR01725	NA	NA
UHGV-0161716_48	PHROG	phrog_88	major tail protein	tail
UHGV-0161716_48	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0161716_48	eggNOG-mapper	1519439.JPJG01000037_gene949	phage major tail protein, phi13 family	NA
UHGV-0161716_48	COG	COG5492	NA	NA
UHGV-0161716_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0161716_49	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0161716_51	PHROG	phrog_33680	NA	unknown function
UHGV-0161716_51	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0161716_51	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0161716_51	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0161716_51	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0161716_53	PHROG	phrog_32744	NA	unknown function
UHGV-0161716_53	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0161716_53	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0161716_56	PHROG	phrog_134	NA	unknown function
UHGV-0161716_56	UniRef90	UniRef90_A0A6G3M4W0	XkdX family protein	NA
UHGV-0161716_56	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0161716_56	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0161716_56	Structural annotation	PF09693, TIGR01669	NA	NA