UHGV-0161763

Genome information

Genome length 38,599 bps

CDS count 55

Completeness 93.51% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161763
vOTU ID	vOTU-065594
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_462429
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.68
Jumbo phage	No

Genome content
Genome length	38,599 bps
GC content	40.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.64%
Average CDS length	624.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161763_1	KOfam	K14059	int; integrase	NA
UHGV-0161763_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0161763_1	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0161763_1	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-0161763_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161763_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161763_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0161763_3	Pfam	PF00227	Proteasome subunit	Proteasome
UHGV-0161763_3	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-0161763_4	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0161763_4	PHROG	phrog_19856	NA	unknown function
UHGV-0161763_4	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-0161763_4	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0161763_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0161763_4	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0161763_5	PHROG	phrog_87	metallo-protease	other
UHGV-0161763_5	UniRef90	UniRef90_UPI0005B2BE6E	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0161763_5	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0161763_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161763_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0161763_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0161763_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0161763_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161763_6	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0161763_6	eggNOG-mapper	396513.SCA_0466	sequence-specific DNA binding	NA
UHGV-0161763_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0161763_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161763_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161763_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161763_7	UniRef90	UniRef90_A0A3B9CCY2	HTH cro/C1-type domain-containing protein	NA
UHGV-0161763_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0161763_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161763_8	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0161763_9	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0161763_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161763_9	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0161763_10	Structural annotation	PF12750	NA	NA
UHGV-0161763_13	Structural annotation	PF00412	NA	NA
UHGV-0161763_14	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161763_14	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0161763_14	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0161763_14	Pfam	PF06378	NA	DUF1071
UHGV-0161763_14	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0161763_15	PHROG	phrog_398	NA	unknown function
UHGV-0161763_15	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0161763_15	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0161763_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0161763_15	Structural annotation	PF16784	NA	NA
UHGV-0161763_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0161763_16	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0161763_16	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0161763_16	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0161763_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0161763_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0161763_17	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0161763_17	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0161763_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0161763_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0161763_17	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0161763_19	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0161763_19	UniRef90	UniRef90_J9GA63	Prophage antirepressor-related protein	NA
UHGV-0161763_19	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0161763_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0161763_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0161763_19	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0161763_21	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0161763_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161763_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161763_23	UniRef90	UniRef90_A0A3R6HYC4	XRE family transcriptional regulator	NA
UHGV-0161763_23	eggNOG-mapper	610130.Closa_0842	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161763_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161763_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161763_24	UniRef90	UniRef90_UPI00189C117A	toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0161763_24	eggNOG-mapper	526218.Sterm_3925	NA	NA
UHGV-0161763_24	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161763_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0161763_25	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0161763_25	UniRef90	UniRef90_A0A415TWU5	AntA domain-containing protein	NA
UHGV-0161763_25	eggNOG-mapper	1235802.C823_01054	AntA/AntB antirepressor	NA
UHGV-0161763_25	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0161763_25	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0161763_25	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0161763_29	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0161763_30	eggNOG-mapper	411463.EUBVEN_01842	NA	NA
UHGV-0161763_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0161763_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0161763_31	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0161763_31	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0161763_31	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0161763_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0161763_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0161763_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0161763_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161763_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0161763_32	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0161763_32	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0161763_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161763_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161763_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161763_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161763_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161763_33	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0161763_33	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0161763_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161763_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161763_34	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0161763_34	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0161763_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161763_34	Structural annotation	PF11114	NA	NA
UHGV-0161763_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161763_35	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0161763_35	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0161763_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161763_35	COG	COG2369	NA	NA
UHGV-0161763_35	Structural annotation	PF06152	NA	NA
UHGV-0161763_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161763_36	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0161763_36	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0161763_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161763_37	PHROG	phrog_283	major head protein	head and packaging
UHGV-0161763_37	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0161763_37	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0161763_37	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0161763_37	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161763_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161763_38	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0161763_39	PHROG	phrog_3366	NA	unknown function
UHGV-0161763_39	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0161763_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0161763_40	PHROG	phrog_3266	tail completion	connector
UHGV-0161763_40	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0161763_40	Structural annotation	PF12691	NA	NA
UHGV-0161763_41	PHROG	phrog_3099	NA	unknown function
UHGV-0161763_41	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0161763_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161763_42	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0161763_42	Structural annotation	PF10666	NA	NA
UHGV-0161763_43	PHROG	phrog_706	NA	unknown function
UHGV-0161763_43	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0161763_43	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0161763_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161763_43	Structural annotation	PF06854	NA	NA
UHGV-0161763_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161763_44	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0161763_44	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0161763_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0161763_45	PHROG	phrog_1194	NA	unknown function
UHGV-0161763_45	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0161763_45	Pfam	PF20458	NA	DUF6711
UHGV-0161763_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0161763_46	PHROG	phrog_18190	NA	unknown function
UHGV-0161763_46	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0161763_46	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0161763_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0161763_46	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0161763_47	PHROG	phrog_17196	kinase	other
UHGV-0161763_47	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0161763_47	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0161763_48	Structural annotation	PF02839	NA	NA
UHGV-0161763_49	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0161763_50	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0161763_50	Structural annotation	NF040910	NA	NA
UHGV-0161763_51	eggNOG-mapper	397291.C804_01089	NA	NA
UHGV-0161763_51	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0161763_52	PHROG	phrog_4105	NA	unknown function
UHGV-0161763_52	eggNOG-mapper	521003.COLINT_02361	NA	NA
UHGV-0161763_53	PHROG	phrog_443	holin	lysis
UHGV-0161763_53	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0161763_53	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0161763_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0161763_53	Structural annotation	PF16945	NA	NA
UHGV-0161763_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0161763_54	PHROG	phrog_670	endolysin	lysis
UHGV-0161763_54	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0161763_54	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0161763_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0161763_54	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0161763_54	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA