UHGV-0161865

Genome information

Genome length 21,251 bps

CDS count 38

Completeness 52.76% (medium-quality)

geNomad score 0.9644

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161865
vOTU ID	vOTU-028063
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_538740
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9644
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.47
Jumbo phage	No

Genome content
Genome length	21,251 bps
GC content	36.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	83.43%
Average CDS length	468.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161865_2	PHROG	phrog_11237	NA	unknown function
UHGV-0161865_2	eggNOG-mapper	641112.ACOK01000073_gene2886	NA	NA
UHGV-0161865_2	Structural annotation	TIGR01636	NA	NA
UHGV-0161865_4	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0161865_6	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-0161865_7	PHROG	phrog_8684	NA	unknown function
UHGV-0161865_7	UniRef90	UniRef90_A0A1C5RI52	YopX protein	NA
UHGV-0161865_7	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0161865_7	Pfam	PF09643	YopX protein	YopX
UHGV-0161865_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0161865_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0161865_8	PHROG	phrog_6802	NA	unknown function
UHGV-0161865_8	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0161865_10	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0161865_10	UniRef90	UniRef90_R6MU33	VRR-NUC domain-containing protein	NA
UHGV-0161865_10	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0161865_10	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0161865_10	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0161865_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0161865_11	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0161865_11	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0161865_11	UniRef90	UniRef90_A0A416CVQ0	ATP-dependent helicase	NA
UHGV-0161865_11	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0161865_11	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0161865_11	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0161865_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0161865_11	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0161865_11	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0161865_12	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0161865_12	UniRef90	UniRef90_A0A1C6FXN2	Superfamily II helicase and inactivated derivatives	NA
UHGV-0161865_12	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0161865_12	Pfam	PF06048	NA	DUF927
UHGV-0161865_12	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0161865_12	COG	COG5519	NA	NA
UHGV-0161865_12	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0161865_13	PHROG	phrog_18107	NA	unknown function
UHGV-0161865_13	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0161865_13	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0161865_13	Pfam	PF05037	NA	DUF669
UHGV-0161865_13	Structural annotation	PF05037	NA	NA
UHGV-0161865_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0161865_14	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0161865_14	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0161865_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0161865_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0161865_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0161865_15	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-0161865_15	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0161865_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0161865_15	Structural annotation	PF05565	NA	NA
UHGV-0161865_16	PHROG	phrog_1029	NA	unknown function
UHGV-0161865_16	UniRef90	UniRef90_M1QIB9	Phage-related protein	NA
UHGV-0161865_16	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-0161865_16	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0161865_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0161865_17	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0161865_17	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0161865_18	PHROG	phrog_28990	NA	unknown function
UHGV-0161865_21	UniRef90	UniRef90_A0A1C6FWP6	Helix-turn-helix domain	NA
UHGV-0161865_21	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0161865_21	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0161865_21	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0161865_26	PHROG	phrog_3240	NA	unknown function
UHGV-0161865_28	PHROG	phrog_750	NA	unknown function
UHGV-0161865_28	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0161865_28	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0161865_29	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0161865_29	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-0161865_29	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0161865_29	Pfam	PF11195	NA	DUF2829
UHGV-0161865_29	Structural annotation	PF11195	NA	NA
UHGV-0161865_30	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0161865_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161865_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0161865_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0161865_31	UniRef90	UniRef90_A0A1C6FWX3	LexA repressor	NA
UHGV-0161865_31	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0161865_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161865_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0161865_31	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0161865_32	KOfam	K14059	int; integrase	NA
UHGV-0161865_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0161865_32	UniRef90	UniRef90_A0A1C6FW60	Tyrosine recombinase XerD	NA
UHGV-0161865_32	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0161865_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0161865_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161865_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161865_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0161865_33	KOfam	K14059	int; integrase	NA
UHGV-0161865_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0161865_33	UniRef90	UniRef90_A0A1C6FWC4	Integrase	NA
UHGV-0161865_33	eggNOG-mapper	742738.HMPREF9460_03649	Phage integrase family	NA
UHGV-0161865_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0161865_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161865_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161865_33	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0161865_34	UniRef90	UniRef90_A0A292SXM8	HTH_17 domain-containing protein	NA
UHGV-0161865_34	eggNOG-mapper	1123511.KB905872_gene1843	Helix-turn-helix domain	NA
UHGV-0161865_34	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0161865_34	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0161865_34	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0161865_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0161865_35	UniRef90	UniRef90_R6MU07	HTH domain protein	NA
UHGV-0161865_35	eggNOG-mapper	585394.RHOM_15275	NA	NA
UHGV-0161865_35	PADLOC	COG2378	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated_signaling	CRISPR-CAS
UHGV-0161865_35	Pfam	PF08279	HTH domain	HTH_11
UHGV-0161865_35	COG	COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	NA
UHGV-0161865_35	Structural annotation	PF09182, MF_01177, NF033788, COG1827	NA	NA
UHGV-0161865_36	KOfam	K20391	plcR; HTH-type transcriptional regulator, pleiotropic regulator of extracellular virulence genes	NA
UHGV-0161865_36	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0161865_36	UniRef90	UniRef90_R6MU12	Transcriptional regulator XRE family	NA
UHGV-0161865_36	eggNOG-mapper	485916.Dtox_1519	sequence-specific DNA binding	NA
UHGV-0161865_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0161865_36	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161865_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161865_36	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161865_37	eggNOG-mapper	742735.HMPREF9467_02791	NA	NA
UHGV-0161865_38	UniRef90	UniRef90_A0A1C6FVQ1	Copper amine oxidase N-terminal domain	NA
UHGV-0161865_38	eggNOG-mapper	485916.Dtox_4298	PFAM Copper amine	NA
UHGV-0161865_38	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0161865_38	COG	COG0103	Ribosomal protein S9	NA