UHGV-0161939

Genome information

Genome length 37,213 bps

CDS count 61

Completeness 94.56% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161939
vOTU ID	vOTU-078823
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_529877
BioSample	SAMN06164714
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.48
Jumbo phage	No

Genome content
Genome length	37,213 bps
GC content	43.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.61%
Average CDS length	569.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161939_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0161939_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0161939_1	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0161939_1	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-0161939_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0161939_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161939_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0161939_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0161939_2	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0161939_2	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0161939_2	UniRef90	UniRef90_A0A350RPP3	SPOR domain-containing protein	NA
UHGV-0161939_2	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0161939_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0161939_2	Pfam	PF05036	SPOR domain	SPOR
UHGV-0161939_2	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0161939_2	Structural annotation	PF01551, PF05036, MF_02022, NF040883, NF008641, COG0739	NA	NA
UHGV-0161939_3	PHROG	phrog_199	holin	lysis
UHGV-0161939_3	UniRef90	UniRef90_A0A373VSF9	Holin	NA
UHGV-0161939_3	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0161939_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0161939_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0161939_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0161939_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0161939_7	PHROG	phrog_18190	NA	unknown function
UHGV-0161939_7	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0161939_7	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0161939_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0161939_7	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0161939_8	PHROG	phrog_1194	NA	unknown function
UHGV-0161939_8	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0161939_8	Pfam	PF20458	NA	DUF6711
UHGV-0161939_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0161939_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161939_9	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0161939_9	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0161939_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0161939_10	PHROG	phrog_706	NA	unknown function
UHGV-0161939_10	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-0161939_10	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0161939_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161939_10	Structural annotation	PF06854	NA	NA
UHGV-0161939_11	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0161939_12	PHROG	phrog_3099	NA	unknown function
UHGV-0161939_12	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0161939_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0161939_13	PHROG	phrog_3266	tail completion	connector
UHGV-0161939_13	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-0161939_13	Structural annotation	PF12691	NA	NA
UHGV-0161939_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161939_14	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0161939_14	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0161939_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161939_14	Structural annotation	PF11114	NA	NA
UHGV-0161939_15	PHROG	phrog_3366	NA	unknown function
UHGV-0161939_15	Pfam	PF20536	NA	DUF6751
UHGV-0161939_15	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0161939_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161939_17	PHROG	phrog_212	major head protein	head and packaging
UHGV-0161939_17	UniRef90	UniRef90_A0A350VVC8	Phage capsid protein	NA
UHGV-0161939_17	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0161939_17	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0161939_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161939_18	UniRef90	UniRef90_A0A174GWW4	Phage minor structural protein GP20	NA
UHGV-0161939_18	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0161939_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161939_18	Structural annotation	PF06810	NA	NA
UHGV-0161939_19	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0161939_19	UniRef90	UniRef90_A0A7X2TBZ3	Rha family transcriptional regulator	NA
UHGV-0161939_19	eggNOG-mapper	97139.C824_03355	Phage regulatory protein	NA
UHGV-0161939_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0161939_19	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0161939_19	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0161939_20	UniRef90	UniRef90_A0A416HC89	CopG family transcriptional regulator	NA
UHGV-0161939_20	eggNOG-mapper	1105031.HMPREF1141_0419	NA	NA
UHGV-0161939_20	Pfam	PF10723	Replication regulatory protein RepB	RepB-RCR_reg
UHGV-0161939_20	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0161939_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161939_22	UniRef90	UniRef90_UPI00156DA0DB	phage minor capsid protein	NA
UHGV-0161939_22	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0161939_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161939_22	COG	COG2369	NA	NA
UHGV-0161939_22	Structural annotation	PF06152	NA	NA
UHGV-0161939_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161939_23	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0161939_23	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0161939_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161939_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161939_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0161939_24	UniRef90	UniRef90_A0A350VVC2	PBSX family phage terminase large subunit	NA
UHGV-0161939_24	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0161939_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0161939_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161939_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161939_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0161939_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0161939_25	UniRef90	UniRef90_A0A417T189	Helix-turn-helix domain-containing protein	NA
UHGV-0161939_25	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0161939_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0161939_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0161939_25	Structural annotation	PF07141	NA	NA
UHGV-0161939_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161939_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0161939_27	UniRef90	UniRef90_R5LYQ9	Single-stranded DNA-binding protein	NA
UHGV-0161939_27	eggNOG-mapper	511680.BUTYVIB_00906	Single-strand binding protein family	NA
UHGV-0161939_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161939_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0161939_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161939_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0161939_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0161939_28	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-0161939_30	Structural annotation	PF18024, TIGR04381	NA	NA
UHGV-0161939_31	PHROG	phrog_17690	NA	unknown function
UHGV-0161939_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0161939_32	PHROG	phrog_26861	NA	unknown function
UHGV-0161939_32	UniRef90	UniRef90_R7MAT7	Single-strand binding protein/Primosomal replication protein n	NA
UHGV-0161939_32	eggNOG-mapper	1232452.BAIB02000009_gene1990	Single-strand binding protein family	NA
UHGV-0161939_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0161939_32	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0161939_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0161939_32	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0161939_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0161939_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0161939_33	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0161939_33	eggNOG-mapper	1082931.KKY_554	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0161939_33	Pfam	PF00075	RNase H	RNase_H
UHGV-0161939_33	COG	COG0328	Ribonuclease HI	NA
UHGV-0161939_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0161939_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0161939_34	PHROG	phrog_15982	NA	unknown function
UHGV-0161939_34	UniRef90	UniRef90_A0A7X5CGW3	NA	NA
UHGV-0161939_34	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0161939_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0161939_34	Pfam	PF12961	NA	DUF3850
UHGV-0161939_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0161939_34	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0161939_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0161939_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0161939_35	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0161939_35	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0161939_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0161939_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0161939_35	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0161939_37	PHROG	phrog_824	NA	unknown function
UHGV-0161939_37	UniRef90	UniRef90_A0A2N0K9N3	Nuclease	NA
UHGV-0161939_37	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0161939_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0161939_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161939_38	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0161939_38	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0161939_38	Structural annotation	PF21578	NA	NA
UHGV-0161939_40	PHROG	phrog_32437	NA	unknown function
UHGV-0161939_40	UniRef90	UniRef90_A0A350VVB0	SLT domain-containing protein	NA
UHGV-0161939_40	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0161939_40	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0161939_40	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0161939_43	eggNOG-mapper	1232443.BAIA02000079_gene64	NA	NA
UHGV-0161939_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161939_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0161939_44	UniRef90	UniRef90_A0A7U9NK71	HTH cro/C1-type domain-containing protein	NA
UHGV-0161939_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161939_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161939_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0161939_45	PHROG	phrog_2232	NA	unknown function
UHGV-0161939_45	UniRef90	UniRef90_UPI001C11A5D2	Abi-alpha family protein	NA
UHGV-0161939_45	eggNOG-mapper	397288.C806_01275	NA	NA
UHGV-0161939_45	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0161939_45	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0161939_50	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0161939_50	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161939_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161939_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0161939_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0161939_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161939_54	UniRef90	UniRef90_A0A350VVA2	XRE family transcriptional regulator	NA
UHGV-0161939_54	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161939_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161939_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161939_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161939_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161939_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0161939_55	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-0161939_55	eggNOG-mapper	1285586.H131_14998	Helix-turn-helix XRE-family like proteins	NA
UHGV-0161939_55	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0161939_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161939_55	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0161939_56	UniRef90	UniRef90_UPI001C116A20	helix-turn-helix domain-containing protein	NA
UHGV-0161939_56	eggNOG-mapper	397287.C807_00257	Helix-turn-helix domain	NA
UHGV-0161939_56	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0161939_57	PHROG	phrog_16228	NA	unknown function
UHGV-0161939_57	UniRef90	UniRef90_A0A1E3UEB9	Uma2 domain-containing protein	NA
UHGV-0161939_57	eggNOG-mapper	1235802.C823_03088	Putative restriction endonuclease	NA
UHGV-0161939_57	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0161939_57	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0161939_57	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0161939_58	PHROG	phrog_87	metallo-protease	other
UHGV-0161939_58	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0161939_58	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0161939_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161939_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0161939_58	Structural annotation	PF06114	NA	NA
UHGV-0161939_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161939_60	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0161939_60	UniRef90	UniRef90_A0A3E5A664	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0161939_60	eggNOG-mapper	536233.CLO_1870	IrrE N-terminal-like domain	NA
UHGV-0161939_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161939_60	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0161939_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161939_60	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0161939_61	eggNOG-mapper	641107.CDLVIII_0962	NA	NA
UHGV-0161939_61	Structural annotation	PF19448	NA	NA