UHGV-0161941

Genome information

Genome length 34,736 bps

CDS count 47

Completeness 99.71% (high-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0161941
vOTU ID	vOTU-059506
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500344
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.33
Jumbo phage	No

Genome content
Genome length	34,736 bps
GC content	55.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.74%
Average CDS length	679.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0161941_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0161941_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0161941_1	UniRef90	UniRef90_A0A417HSQ2	Recombinase family protein	NA
UHGV-0161941_1	eggNOG-mapper	1356854.N007_18555	Recombinase	NA
UHGV-0161941_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0161941_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0161941_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0161941_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0161941_4	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0161941_4	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-0161941_4	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0161941_4	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0161941_5	PHROG	phrog_1129	holin	lysis
UHGV-0161941_5	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0161941_5	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0161941_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0161941_5	Structural annotation	PF06946	NA	NA
UHGV-0161941_6	PHROG	phrog_4105	NA	unknown function
UHGV-0161941_6	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-0161941_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0161941_7	PHROG	phrog_1794	amidase	lysis
UHGV-0161941_7	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0161941_7	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0161941_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0161941_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0161941_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0161941_8	Structural annotation	PF00629, NF033675	NA	NA
UHGV-0161941_9	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0161941_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0161941_10	PHROG	phrog_6616	tail protein	tail
UHGV-0161941_10	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0161941_10	COG	COG4926	Phage-related protein	NA
UHGV-0161941_10	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0161941_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0161941_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0161941_12	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0161941_12	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0161941_12	COG	COG1511	NA	NA
UHGV-0161941_13	PHROG	phrog_706	NA	unknown function
UHGV-0161941_13	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0161941_13	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0161941_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0161941_13	Structural annotation	PF06854	NA	NA
UHGV-0161941_14	PHROG	phrog_11299	NA	unknown function
UHGV-0161941_14	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0161941_14	Structural annotation	PF10666	NA	NA
UHGV-0161941_15	PHROG	phrog_3099	NA	unknown function
UHGV-0161941_15	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0161941_15	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0161941_16	PHROG	phrog_3266	tail completion	connector
UHGV-0161941_16	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0161941_16	Structural annotation	PF12691	NA	NA
UHGV-0161941_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0161941_17	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0161941_17	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0161941_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0161941_17	Structural annotation	PF11114	NA	NA
UHGV-0161941_18	PHROG	phrog_3366	NA	unknown function
UHGV-0161941_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0161941_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0161941_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0161941_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0161941_20	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0161941_20	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0161941_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0161941_21	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0161941_21	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0161941_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0161941_21	Structural annotation	PF06810	NA	NA
UHGV-0161941_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0161941_23	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0161941_23	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0161941_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0161941_23	Pfam	PF21814	NA	DUF6883
UHGV-0161941_23	COG	COG2369	NA	NA
UHGV-0161941_23	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0161941_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0161941_24	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0161941_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0161941_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0161941_25	PHROG	phrog_1233	NA	unknown function
UHGV-0161941_25	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0161941_25	Structural annotation	PF13058	NA	NA
UHGV-0161941_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0161941_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0161941_26	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0161941_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0161941_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0161941_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0161941_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0161941_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0161941_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0161941_26	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0161941_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0161941_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0161941_28	UniRef90	UniRef90_A0A7D6VSS6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0161941_28	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0161941_28	Pfam	PF07374	NA	DUF1492
UHGV-0161941_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0161941_29	PHROG	phrog_3136	NA	unknown function
UHGV-0161941_29	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0161941_29	Pfam	PF04266	ASCH domain	ASCH
UHGV-0161941_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0161941_29	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0161941_30	PHROG	phrog_5781	NA	unknown function
UHGV-0161941_30	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0161941_30	Pfam	PF14359	NA	DUF4406
UHGV-0161941_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0161941_30	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0161941_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0161941_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0161941_31	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0161941_31	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0161941_31	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0161941_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0161941_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0161941_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0161941_32	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0161941_33	KOfam	K03700	recU; recombination protein U	NA
UHGV-0161941_33	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0161941_33	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0161941_33	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0161941_33	Pfam	PF03838	Recombination protein U	RecU
UHGV-0161941_33	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0161941_33	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0161941_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0161941_34	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0161941_34	Structural annotation	PF21578	NA	NA
UHGV-0161941_37	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0161941_37	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0161941_37	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0161941_37	eggNOG-mapper	1120998.AUFC01000033_gene2303	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	NA
UHGV-0161941_37	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0161941_37	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0161941_37	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0161941_37	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0161941_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0161941_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0161941_41	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-0161941_41	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0161941_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0161941_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0161941_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0161941_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0161941_42	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0161941_42	eggNOG-mapper	1120971.AUCA01000073_gene2914	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0161941_42	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0161941_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0161941_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0161941_43	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0161941_43	PHROG	phrog_19856	NA	unknown function
UHGV-0161941_43	UniRef90	UniRef90_UPI001294DFE1	restriction endonuclease	NA
UHGV-0161941_43	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0161941_43	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0161941_43	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0161941_43	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0161941_43	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-0161941_44	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0161941_45	PHROG	phrog_11623	NA	unknown function
UHGV-0161941_45	UniRef90	UniRef90_A0A7X8K2Z3	NA	NA
UHGV-0161941_45	eggNOG-mapper	1111121.HMPREF1247_1100	Cold shock	NA
UHGV-0161941_45	Pfam	PF12873	NA	DUF3825
UHGV-0161941_45	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0161941_45	Structural annotation	PF12873	NA	NA
UHGV-0161941_46	PHROG	phrog_5978	NA	unknown function
UHGV-0161941_46	UniRef90	UniRef90_A0A372UZA0	Fic family protein	NA
UHGV-0161941_46	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0161941_46	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0161941_46	COG	COG3177	Fic family protein	NA
UHGV-0161941_46	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0161941_47	KOfam	K14059	int; integrase	NA
UHGV-0161941_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0161941_47	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0161941_47	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0161941_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0161941_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0161941_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0161941_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA