UHGV-0162028

Genome information

Genome length 41,073 bps

CDS count 68

Completeness 77.97% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162028
vOTU ID	vOTU-018270
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539956
BioSample	SAMN06328501
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.34
Jumbo phage	No

Genome content
Genome length	41,073 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.34%
Average CDS length	554.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162028_1	UniRef90	UniRef90_R6R313	NA	NA
UHGV-0162028_6	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0162028_6	PHROG	phrog_19349	NA	unknown function
UHGV-0162028_6	UniRef90	UniRef90_A0A329UG67	SLT domain-containing protein	NA
UHGV-0162028_6	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0162028_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0162028_6	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0162028_6	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0162028_8	PHROG	phrog_24518	NA	unknown function
UHGV-0162028_8	eggNOG-mapper	1007096.BAGW01000031_gene121	NA	NA
UHGV-0162028_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0162028_12	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0162028_12	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0162028_13	PHROG	phrog_824	NA	unknown function
UHGV-0162028_13	UniRef90	UniRef90_R6BNN8	VRR-NUC domain protein	NA
UHGV-0162028_13	eggNOG-mapper	610130.Closa_0716	VRR_NUC	NA
UHGV-0162028_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0162028_19	Structural annotation	PF06442, MF_01194, NF000331, COG1862	NA	NA
UHGV-0162028_20	PHROG	phrog_22389	NA	unknown function
UHGV-0162028_20	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0162028_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0162028_21	UniRef90	UniRef90_A0A6N2R4S8	Sigma70_r4 domain-containing protein	NA
UHGV-0162028_21	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0162028_21	Pfam	PF07374	NA	DUF1492
UHGV-0162028_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0162028_22	UniRef90	UniRef90_A0A1C6IDQ4	RHH_1 domain-containing protein	NA
UHGV-0162028_22	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0162028_22	Structural annotation	PF01402, NF010256	NA	NA
UHGV-0162028_24	Structural annotation	NF007312, COG2336	NA	NA
UHGV-0162028_26	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0162028_26	UniRef90	UniRef90_A0A6A8VHH8	Helix-turn-helix domain-containing protein	NA
UHGV-0162028_26	eggNOG-mapper	1232447.BAHW02000027_gene1846	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162028_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162028_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0162028_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0162028_28	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0162028_28	UniRef90	UniRef90_A0A417Q583	Phage portal protein	NA
UHGV-0162028_28	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0162028_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0162028_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0162028_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0162028_28	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0162028_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162028_29	PHROG	phrog_10250	NA	unknown function
UHGV-0162028_29	UniRef90	UniRef90_A0A4R7KUL1	PBSX family phage terminase large subunit	NA
UHGV-0162028_29	eggNOG-mapper	756499.Desde_1076	TIGRFAM Phage terminase, large subunit, PBSX	NA
UHGV-0162028_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0162028_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0162028_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162028_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0162028_30	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0162028_30	UniRef90	UniRef90_A0A1C5ZD76	Phage portal protein, HK97 family	NA
UHGV-0162028_30	eggNOG-mapper	1226322.HMPREF1545_03546	Phage Mu protein F like protein	NA
UHGV-0162028_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0162028_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0162028_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0162028_30	COG	COG2369	NA	NA
UHGV-0162028_30	Structural annotation	PF04860, PF06152, TIGR01537, TIGR01641, COG4695, COG2369	NA	NA
UHGV-0162028_31	KOfam	K06904	NA	NA
UHGV-0162028_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0162028_31	UniRef90	UniRef90_A0A1C6IFD5	Phage prohead protease, HK97 family	NA
UHGV-0162028_31	eggNOG-mapper	1226322.HMPREF1545_03547	Caudovirus prohead serine protease	NA
UHGV-0162028_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0162028_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0162028_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0162028_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0162028_32	PHROG	phrog_617	major head protein	head and packaging
UHGV-0162028_32	UniRef90	UniRef90_U2QNU2	Phage capsid family protein	NA
UHGV-0162028_32	eggNOG-mapper	1226322.HMPREF1545_03548	Phage capsid family	NA
UHGV-0162028_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0162028_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0162028_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162028_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162028_33	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0162028_33	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0162028_33	UniRef90	UniRef90_A0A0V8QB06	Addiction module toxin RelE	NA
UHGV-0162028_33	eggNOG-mapper	476272.RUMHYD_01668	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0162028_33	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0162028_33	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0162028_33	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0162028_33	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0162028_34	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0162028_34	PHROG	phrog_2737	NA	unknown function
UHGV-0162028_34	UniRef90	UniRef90_UPI000B7DED61	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0162028_34	eggNOG-mapper	742738.HMPREF9460_03724	RelB antitoxin	NA
UHGV-0162028_34	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0162028_34	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0162028_34	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0162028_34	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0162028_35	PHROG	phrog_5707	NA	unknown function
UHGV-0162028_35	eggNOG-mapper	1203606.HMPREF1526_00279	NA	NA
UHGV-0162028_35	Structural annotation	PF10807, MF_01372, NF007541	NA	NA
UHGV-0162028_36	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0162028_36	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0162028_36	UniRef90	UniRef90_UPI00189F9CC1	head fiber protein	NA
UHGV-0162028_36	eggNOG-mapper	1203606.HMPREF1526_01905	Collagen triple helix repeat (20 copies)	NA
UHGV-0162028_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0162028_36	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0162028_36	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0162028_37	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0162028_37	UniRef90	UniRef90_UPI001899B1A1	phage head-tail connector protein	NA
UHGV-0162028_37	eggNOG-mapper	1226322.HMPREF1545_03551	NA	NA
UHGV-0162028_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0162028_37	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0162028_38	PHROG	phrog_222	tail protein	tail
UHGV-0162028_38	eggNOG-mapper	1226322.HMPREF1545_03552	NA	NA
UHGV-0162028_38	Structural annotation	PF20039	NA	NA
UHGV-0162028_39	PHROG	phrog_22797	NA	unknown function
UHGV-0162028_39	eggNOG-mapper	1226322.HMPREF1545_03553	NA	NA
UHGV-0162028_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0162028_40	PHROG	phrog_1232	NA	unknown function
UHGV-0162028_40	eggNOG-mapper	411902.CLOBOL_05660	NA	NA
UHGV-0162028_41	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0162028_41	UniRef90	UniRef90_UPI000B38F23E	NA	NA
UHGV-0162028_41	eggNOG-mapper	1226322.HMPREF1545_03555	NA	NA
UHGV-0162028_41	Pfam	PF11863	NA	DUF3383
UHGV-0162028_41	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0162028_42	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0162028_42	UniRef90	UniRef90_UPI000B36D878	NA	NA
UHGV-0162028_42	eggNOG-mapper	411902.CLOBOL_05658	NA	NA
UHGV-0162028_42	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0162028_43	PHROG	phrog_1778	NA	unknown function
UHGV-0162028_43	eggNOG-mapper	1226322.HMPREF1545_03557	NA	NA
UHGV-0162028_43	Structural annotation	PF16462	NA	NA
UHGV-0162028_44	PHROG	phrog_28083	NA	unknown function
UHGV-0162028_44	UniRef90	UniRef90_A0A1C5ZE14	Phage-related protein	NA
UHGV-0162028_44	eggNOG-mapper	1226322.HMPREF1545_03559	Phage tail tape measure protein TP901	NA
UHGV-0162028_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0162028_44	Structural annotation	PF20155	NA	NA
UHGV-0162028_45	PHROG	phrog_37482	NA	unknown function
UHGV-0162028_45	eggNOG-mapper	1226322.HMPREF1545_03560	NA	NA
UHGV-0162028_45	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0162028_45	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0162028_46	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0162028_46	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0162028_46	UniRef90	UniRef90_A0A176U291	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0162028_46	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0162028_46	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0162028_46	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0162028_47	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0162028_47	UniRef90	UniRef90_A0A3E3K2T1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0162028_47	eggNOG-mapper	1235792.C808_03054	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0162028_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0162028_47	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0162028_47	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0162028_48	PHROG	phrog_1264	NA	unknown function
UHGV-0162028_48	eggNOG-mapper	1226322.HMPREF1545_03561	NA	NA
UHGV-0162028_49	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0162028_49	eggNOG-mapper	1226322.HMPREF1545_03562	NA	NA
UHGV-0162028_49	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0162028_50	UniRef90	UniRef90_A0A3A8YXC1	Gp138_N domain-containing protein	NA
UHGV-0162028_50	eggNOG-mapper	1226322.HMPREF1545_03563	Baseplate assembly protein	NA
UHGV-0162028_50	Pfam	PF18352	NA	Gp138_N
UHGV-0162028_50	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0162028_50	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0162028_51	PHROG	phrog_120	baseplate protein	tail
UHGV-0162028_51	UniRef90	UniRef90_UPI000B36EDBB	NA	NA
UHGV-0162028_51	eggNOG-mapper	1226322.HMPREF1545_03565	NA	NA
UHGV-0162028_51	Pfam	PF10934	NA	DUF2634
UHGV-0162028_51	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0162028_52	PHROG	phrog_6	baseplate protein	tail
UHGV-0162028_52	UniRef90	UniRef90_U2QMY6	Baseplate_J domain-containing protein	NA
UHGV-0162028_52	eggNOG-mapper	1226322.HMPREF1545_03566	Baseplate J-like protein	NA
UHGV-0162028_52	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0162028_52	COG	COG3299	NA	NA
UHGV-0162028_52	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0162028_53	PHROG	phrog_1160	baseplate protein	tail
UHGV-0162028_53	eggNOG-mapper	1226322.HMPREF1545_03567	NA	NA
UHGV-0162028_53	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0162028_54	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-0162028_54	UniRef90	UniRef90_UPI0012FED987	phage tail protein	NA
UHGV-0162028_54	eggNOG-mapper	1033737.CAEV01000007_gene2578	Phage tail-collar fibre protein	NA
UHGV-0162028_54	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0162028_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0162028_55	KOfam	K06871	NA	NA
UHGV-0162028_55	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0162028_55	UniRef90	UniRef90_A0A316LV83	Radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-0162028_55	eggNOG-mapper	431943.CKL_1831	4Fe-4S single cluster domain	NA
UHGV-0162028_55	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0162028_55	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0162028_55	NCBIFam	TIGR04115.1	radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-0162028_55	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-0162028_55	Structural annotation	PF00962, MF_00660, TIGR04115, COG0641	NA	NA
UHGV-0162028_60	PHROG	phrog_3545	NA	unknown function
UHGV-0162028_60	UniRef90	UniRef90_A0A498RAG6	Fibronectin type iii	NA
UHGV-0162028_60	eggNOG-mapper	1203606.HMPREF1526_00967	Concanavalin A-like lectin/glucanases superfamily	NA
UHGV-0162028_60	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0162028_60	COG	COG3209	NA	NA
UHGV-0162028_62	NCBIFam	TIGR04114.1	Cys-rich repeat-containing protein	NA
UHGV-0162028_66	PHROG	phrog_9428	NA	unknown function
UHGV-0162028_66	UniRef90	UniRef90_UPI0019685E42	serine/threonine protein kinase	NA
UHGV-0162028_66	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0162028_67	KOfam	K07273	acm; lysozyme	NA
UHGV-0162028_67	PHROG	phrog_291	endolysin	lysis
UHGV-0162028_67	UniRef90	UniRef90_R6BDP1	SPOR domain-containing protein	NA
UHGV-0162028_67	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0162028_67	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0162028_67	Pfam	PF05036	SPOR domain	SPOR
UHGV-0162028_67	COG	COG1388	LysM repeat	NA
UHGV-0162028_67	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0162028_68	PHROG	phrog_6918	holin	lysis
UHGV-0162028_68	UniRef90	UniRef90_R6CQ55	Putative phage holin LL-H family	NA
UHGV-0162028_68	eggNOG-mapper	552398.HMPREF0866_03092	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0162028_68	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0162028_68	Structural annotation	PF09682, TIGR01673	NA	NA