UHGV-0162249

Genome information

Genome length 31,336 bps

CDS count 57

Completeness 73.95% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162249
vOTU ID	vOTU-028076
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_520104
BioSample	SAMN06164521
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.95
Jumbo phage	No

Genome content
Genome length	31,336 bps
GC content	55.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.65%
Average CDS length	489.26 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162249_1	PHROG	phrog_1794	amidase	lysis
UHGV-0162249_1	UniRef90	UniRef90_A0A351TNA7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-0162249_1	eggNOG-mapper	689781.AUJX01000031_gene93	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162249_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162249_2	PHROG	phrog_443	holin	lysis
UHGV-0162249_2	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0162249_2	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0162249_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0162249_2	Structural annotation	PF16945	NA	NA
UHGV-0162249_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162249_7	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0162249_8	UniRef90	UniRef90_R6LIN8	HTH cro/C1-type domain-containing protein	NA
UHGV-0162249_8	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0162249_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0162249_8	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0162249_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0162249_10	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0162249_10	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0162249_10	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0162249_10	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0162249_11	Structural annotation	PF04545	NA	NA
UHGV-0162249_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0162249_13	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0162249_13	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0162249_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0162249_13	COG	COG2369	NA	NA
UHGV-0162249_13	Structural annotation	PF06152	NA	NA
UHGV-0162249_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0162249_15	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0162249_15	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0162249_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0162249_15	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0162249_16	PHROG	phrog_909	major head protein	head and packaging
UHGV-0162249_16	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0162249_16	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0162249_16	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0162249_16	Structural annotation	PF02924	NA	NA
UHGV-0162249_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0162249_17	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0162249_17	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0162249_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0162249_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0162249_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0162249_18	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-0162249_19	PHROG	phrog_3366	NA	unknown function
UHGV-0162249_19	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0162249_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0162249_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0162249_20	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0162249_20	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0162249_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0162249_20	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0162249_21	PHROG	phrog_3266	tail completion	connector
UHGV-0162249_21	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0162249_21	Structural annotation	PF12691	NA	NA
UHGV-0162249_22	PHROG	phrog_3099	NA	unknown function
UHGV-0162249_22	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0162249_22	Structural annotation	TIGR02126	NA	NA
UHGV-0162249_23	PHROG	phrog_11299	NA	unknown function
UHGV-0162249_23	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0162249_23	Structural annotation	PF10666	NA	NA
UHGV-0162249_24	PHROG	phrog_706	NA	unknown function
UHGV-0162249_24	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0162249_24	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0162249_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0162249_24	Structural annotation	PF06854	NA	NA
UHGV-0162249_25	PHROG	phrog_806	NA	unknown function
UHGV-0162249_25	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0162249_25	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0162249_25	Pfam	PF11611	NA	DUF4352
UHGV-0162249_25	Structural annotation	PF11611, PF06832, MF_00791, NF003967, COG2967	NA	NA
UHGV-0162249_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0162249_26	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0162249_26	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0162249_26	COG	COG1511	NA	NA
UHGV-0162249_26	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0162249_27	PHROG	phrog_1194	NA	unknown function
UHGV-0162249_27	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0162249_27	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0162249_28	PHROG	phrog_13879	NA	unknown function
UHGV-0162249_28	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0162249_28	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0162249_29	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0162249_32	PHROG	phrog_10898	NA	unknown function
UHGV-0162249_32	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0162249_32	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0162249_32	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0162249_32	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0162249_33	PHROG	phrog_10898	NA	unknown function
UHGV-0162249_33	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0162249_35	PHROG	phrog_37900	NA	unknown function
UHGV-0162249_35	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0162249_35	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0162249_35	Pfam	PF19789	NA	DUF6273
UHGV-0162249_35	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0162249_35	Structural annotation	PF19789	NA	NA
UHGV-0162249_36	PHROG	phrog_29409	NA	unknown function
UHGV-0162249_38	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0162249_38	PHROG	phrog_30034	NA	unknown function
UHGV-0162249_38	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0162249_38	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0162249_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0162249_38	Structural annotation	PF14600	NA	NA
UHGV-0162249_39	PHROG	phrog_18725	NA	unknown function
UHGV-0162249_39	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0162249_40	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0162249_41	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0162249_41	Structural annotation	PF07484	NA	NA
UHGV-0162249_45	PHROG	phrog_13256	NA	unknown function
UHGV-0162249_45	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0162249_46	PHROG	phrog_14030	NA	unknown function
UHGV-0162249_46	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0162249_46	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0162249_46	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0162249_47	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0162249_50	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0162249_50	eggNOG-mapper	1280680.AUJU01000007_gene2221	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162249_50	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0162249_50	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0162249_51	PHROG	phrog_3754	NA	unknown function
UHGV-0162249_51	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0162249_52	PHROG	phrog_21718	NA	unknown function
UHGV-0162249_52	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0162249_53	PHROG	phrog_22984	NA	unknown function
UHGV-0162249_54	PHROG	phrog_16490	NA	unknown function
UHGV-0162249_54	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0162249_55	PHROG	phrog_20016	NA	unknown function
UHGV-0162249_55	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0162249_55	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0162249_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0162249_56	Structural annotation	PF12510	NA	NA
UHGV-0162249_57	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA