UHGV-0162387

Genome information

Genome length 35,360 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162387
vOTU ID	vOTU-046324
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_511999
BioSample	SAMN06164495
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.34
Jumbo phage	No

Genome content
Genome length	35,360 bps
GC content	49.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	89.99%
Average CDS length	640.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162387_1	PHROG	phrog_3266	tail completion	connector
UHGV-0162387_1	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0162387_1	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0162387_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0162387_2	UniRef90	UniRef90_A0A6L5YLT4	Capsid protein	NA
UHGV-0162387_2	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0162387_2	Structural annotation	PF11114	NA	NA
UHGV-0162387_3	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0162387_3	Pfam	PF20536	NA	DUF6751
UHGV-0162387_3	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0162387_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0162387_4	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0162387_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0162387_5	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162387_5	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0162387_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0162387_5	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0162387_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0162387_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162387_5	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162387_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0162387_6	UniRef90	UniRef90_UPI000B98950A	phage scaffolding protein	NA
UHGV-0162387_6	eggNOG-mapper	1462526.BN990_03874	Phage minor structural protein GP20	NA
UHGV-0162387_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0162387_6	Structural annotation	PF06810	NA	NA
UHGV-0162387_7	eggNOG-mapper	1064535.MELS_1696	NA	NA
UHGV-0162387_7	Structural annotation	PF20111	NA	NA
UHGV-0162387_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0162387_8	UniRef90	UniRef90_UPI001897D243	phage minor capsid protein	NA
UHGV-0162387_8	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0162387_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0162387_8	COG	COG2369	NA	NA
UHGV-0162387_8	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0162387_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0162387_9	UniRef90	UniRef90_A0A0X8V930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0162387_9	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0162387_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162387_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0162387_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162387_10	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0162387_10	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0162387_10	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0162387_10	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0162387_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0162387_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162387_10	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0162387_11	PHROG	phrog_2412	NA	unknown function
UHGV-0162387_11	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0162387_11	eggNOG-mapper	563192.HMPREF0179_00168	NA	NA
UHGV-0162387_12	eggNOG-mapper	1123288.SOV_6c01510	NA	NA
UHGV-0162387_12	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0162387_12	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0162387_16	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0162387_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0162387_16	UniRef90	UniRef90_A0A3R6QKL8	SF4 helicase domain-containing protein	NA
UHGV-0162387_16	eggNOG-mapper	1298920.KI911353_gene2713	Participates in initiation and elongation during chromosome replication	NA
UHGV-0162387_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0162387_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0162387_16	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0162387_17	PHROG	phrog_16826	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0162387_17	UniRef90	UniRef90_A0A454HE13	Phage_rep_O domain-containing protein	NA
UHGV-0162387_17	eggNOG-mapper	1403313.AXBR01000002_gene4284	Bacteriophage replication protein O	NA
UHGV-0162387_17	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0162387_17	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0162387_17	Structural annotation	PF04492, MF_01177, TIGR01610, COG3388	NA	NA
UHGV-0162387_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0162387_19	UniRef90	UniRef90_A0A849CYM1	ERCC4 domain-containing protein	NA
UHGV-0162387_19	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-0162387_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0162387_19	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0162387_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0162387_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0162387_20	UniRef90	UniRef90_A0A7C6HEH6	Single-stranded DNA-binding protein	NA
UHGV-0162387_20	eggNOG-mapper	1392491.JIAE01000001_gene2290	Single-stranded DNA-binding protein	NA
UHGV-0162387_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0162387_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0162387_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0162387_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0162387_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0162387_21	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162387_21	UniRef90	UniRef90_UPI00041F978E	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0162387_21	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0162387_21	Pfam	PF12684	NA	DUF3799
UHGV-0162387_21	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0162387_21	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0162387_22	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0162387_22	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0162387_22	eggNOG-mapper	887325.HMPREF0381_0098	NA	NA
UHGV-0162387_22	Pfam	PF03837	RecT family	RecT
UHGV-0162387_22	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0162387_26	UniRef90	UniRef90_UPI001379C673	pentapeptide repeat-containing protein	NA
UHGV-0162387_26	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0162387_26	Structural annotation	PF00805	NA	NA
UHGV-0162387_32	UniRef90	UniRef90_A0A1V5XDM9	Arc domain-containing protein	NA
UHGV-0162387_32	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0162387_34	PHROG	phrog_1129	holin	lysis
UHGV-0162387_34	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0162387_34	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0162387_34	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0162387_34	Structural annotation	PF16079	NA	NA
UHGV-0162387_35	PHROG	phrog_1863	NA	unknown function
UHGV-0162387_35	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0162387_35	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0162387_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0162387_36	PHROG	phrog_9611	endolysin	lysis
UHGV-0162387_36	UniRef90	UniRef90_UPI0007DBF2D5	peptidoglycan recognition protein family protein	NA
UHGV-0162387_36	eggNOG-mapper	754027.HMPREF9554_00689	Ami_2	NA
UHGV-0162387_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0162387_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0162387_36	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0162387_38	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0162387_39	eggNOG-mapper	521097.Coch_0634	NA	NA
UHGV-0162387_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0162387_41	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0162387_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0162387_42	eggNOG-mapper	935836.JAEL01000021_gene1484	Phage tail protein	NA
UHGV-0162387_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0162387_42	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0162387_43	PHROG	phrog_19074	NA	unknown function
UHGV-0162387_43	UniRef90	UniRef90_UPI000B35CE0B	phage tail tape measure protein	NA
UHGV-0162387_43	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0162387_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0162387_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0162387_43	COG	COG3883	NA	NA
UHGV-0162387_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0162387_44	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0162387_44	UniRef90	UniRef90_UPI0008B61414	phage antirepressor KilAC domain-containing protein	NA
UHGV-0162387_44	eggNOG-mapper	1499683.CCFF01000017_gene2614	Phage antirepressor protein	NA
UHGV-0162387_44	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0162387_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0162387_44	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0162387_44	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0162387_48	PHROG	phrog_706	NA	unknown function
UHGV-0162387_48	UniRef90	UniRef90_UPI00189B9FA2	bacteriophage Gp15 family protein	NA
UHGV-0162387_48	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0162387_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0162387_48	Structural annotation	PF06854	NA	NA
UHGV-0162387_49	PHROG	phrog_4450	NA	unknown function
UHGV-0162387_49	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0162387_49	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0162387_49	Pfam	PF20378	NA	DUF6673
UHGV-0162387_49	Structural annotation	PF20378	NA	NA
UHGV-0162387_50	PHROG	phrog_3099	NA	unknown function
UHGV-0162387_50	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0162387_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA