UHGV-0162400

Genome information

Genome length 36,285 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162400
vOTU ID	vOTU-046325
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_535872
BioSample	SAMN06164697
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.61
Jumbo phage	No

Genome content
Genome length	36,285 bps
GC content	45.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.23%
Average CDS length	754.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162400_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0162400_1	UniRef90	UniRef90_A0A174Z867	Phage minor capsid protein 2	NA
UHGV-0162400_1	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0162400_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0162400_1	COG	COG2369	NA	NA
UHGV-0162400_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0162400_2	UniRef90	UniRef90_R6RJD0	Putative phage minor capsid protein	NA
UHGV-0162400_2	eggNOG-mapper	717606.PaecuDRAFT_3119	NA	NA
UHGV-0162400_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162400_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0162400_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162400_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0162400_3	UniRef90	UniRef90_R6RCX9	Phage terminase large subunit PBSX family	NA
UHGV-0162400_3	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0162400_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162400_3	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0162400_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0162400_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0162400_4	UniRef90	UniRef90_R6RJD3	Phage Terminase Small Subunit	NA
UHGV-0162400_4	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0162400_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0162400_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0162400_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0162400_5	PHROG	phrog_3243	NA	unknown function
UHGV-0162400_5	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0162400_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0162400_6	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0162400_6	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0162400_6	Structural annotation	PF07374	NA	NA
UHGV-0162400_9	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0162400_9	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0162400_9	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0162400_9	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0162400_9	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0162400_9	Pfam	PF19263	NA	DUF5906
UHGV-0162400_9	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0162400_9	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0162400_9	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0162400_9	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0162400_10	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0162400_10	UniRef90	UniRef90_UPI0019172865	NA	NA
UHGV-0162400_10	Pfam	PF05037	NA	DUF669
UHGV-0162400_10	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0162400_11	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0162400_11	UniRef90	UniRef90_A0A6N4AKU7	VRR-NUC domain-containing protein	NA
UHGV-0162400_11	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0162400_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0162400_11	Structural annotation	PF03838, MF_04160, NF002583	NA	NA
UHGV-0162400_12	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0162400_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0162400_12	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-0162400_12	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0162400_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0162400_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0162400_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0162400_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0162400_12	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0162400_13	PHROG	phrog_1366	NA	unknown function
UHGV-0162400_13	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0162400_13	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-0162400_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0162400_13	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0162400_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0162400_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0162400_14	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-0162400_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0162400_14	Structural annotation	PF05565	NA	NA
UHGV-0162400_15	PHROG	phrog_15609	NA	unknown function
UHGV-0162400_15	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0162400_15	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0162400_15	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0162400_16	PHROG	phrog_8470	NA	unknown function
UHGV-0162400_16	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0162400_16	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0162400_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0162400_16	Structural annotation	PF14284	NA	NA
UHGV-0162400_17	PHROG	phrog_38338	NA	unknown function
UHGV-0162400_17	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0162400_17	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0162400_18	PHROG	phrog_14105	NA	unknown function
UHGV-0162400_18	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0162400_18	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0162400_18	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0162400_18	COG	COG5651	PPE-repeat protein	NA
UHGV-0162400_21	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0162400_21	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0162400_21	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0162400_22	eggNOG-mapper	1262449.CP6013_3197	NA	NA
UHGV-0162400_24	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0162400_24	UniRef90	UniRef90_A0A1H7MRU5	HTH cro/C1-type domain-containing protein	NA
UHGV-0162400_24	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0162400_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162400_25	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0162400_25	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0162400_25	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-0162400_25	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0162400_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162400_25	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0162400_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0162400_25	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0162400_26	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0162400_27	KOfam	K14059	int; integrase	NA
UHGV-0162400_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0162400_27	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0162400_27	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0162400_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0162400_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0162400_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0162400_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0162400_28	PHROG	phrog_20388	endolysin	lysis
UHGV-0162400_28	UniRef90	UniRef90_A0A174YZL2	Cpl-7 lysozyme C-terminal domain	NA
UHGV-0162400_28	eggNOG-mapper	478749.BRYFOR_08515	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0162400_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0162400_28	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0162400_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162400_28	Structural annotation	PF01510, PF18350, MF_04111, MF_01354, NF008758, COG3023, COG2139	NA	NA
UHGV-0162400_29	PHROG	phrog_199	holin	lysis
UHGV-0162400_29	UniRef90	UniRef90_R6RVE6	Toxin secretion/phage lysis holin	NA
UHGV-0162400_29	eggNOG-mapper	720554.Clocl_3702	toxin secretion phage lysis holin	NA
UHGV-0162400_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0162400_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0162400_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0162400_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0162400_30	PHROG	phrog_1401	NA	unknown function
UHGV-0162400_30	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0162400_30	Structural annotation	PF07761	NA	NA
UHGV-0162400_31	PHROG	phrog_2566	NA	unknown function
UHGV-0162400_31	eggNOG-mapper	203120.LEUM_1633	NA	NA
UHGV-0162400_32	PHROG	phrog_25468	NA	unknown function
UHGV-0162400_32	UniRef90	UniRef90_A0A174YZH7	Peptidase S74 domain-containing protein	NA
UHGV-0162400_32	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0162400_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0162400_32	COG	COG4926	Phage-related protein	NA
UHGV-0162400_32	Structural annotation	PF14594, PF14879, NF033848, NF033675, COG3500	NA	NA
UHGV-0162400_33	PHROG	phrog_1194	NA	unknown function
UHGV-0162400_33	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0162400_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0162400_34	UniRef90	UniRef90_A0A174Z8D9	Phage-related protein	NA
UHGV-0162400_34	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-0162400_34	COG	COG1511	NA	NA
UHGV-0162400_35	PHROG	phrog_8355	NA	unknown function
UHGV-0162400_35	UniRef90	UniRef90_UPI0018A7EA5D	Gp15 family bacteriophage protein	NA
UHGV-0162400_35	eggNOG-mapper	1507.HMPREF0262_00214	NA	NA
UHGV-0162400_36	PHROG	phrog_8300	NA	unknown function
UHGV-0162400_36	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0162400_37	PHROG	phrog_820	major tail protein	tail
UHGV-0162400_37	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0162400_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0162400_38	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0162400_38	UniRef90	UniRef90_UPI001BEB3BC5	minor capsid protein	NA
UHGV-0162400_38	eggNOG-mapper	717606.PaecuDRAFT_3128	NA	NA
UHGV-0162400_38	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0162400_38	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0162400_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0162400_39	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-0162400_40	PHROG	phrog_8710	NA	unknown function
UHGV-0162400_40	eggNOG-mapper	483218.BACPEC_01152	NA	NA
UHGV-0162400_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0162400_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0162400_41	eggNOG-mapper	1507.HMPREF0262_01180	NA	NA
UHGV-0162400_42	PHROG	phrog_1378	NA	unknown function
UHGV-0162400_42	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0162400_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0162400_43	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-0162400_43	eggNOG-mapper	483218.BACPEC_01155	NA	NA
UHGV-0162400_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0162400_46	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0162400_46	UniRef90	UniRef90_A0A174Z3H5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0162400_46	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0162400_46	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0162400_46	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA