UHGV-0162401

Genome information

vOTU vOTU-019635

Genome length 37,636 bps

CDS count 50

Completeness 65.79% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162401
vOTU ID	vOTU-019635
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_535859
BioSample	SAMN06164673
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.02
Jumbo phage	No

Genome content
Genome length	37,636 bps
GC content	38.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	84.93%
Average CDS length	641.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162401_1	PHROG	phrog_21498	NA	unknown function
UHGV-0162401_1	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0162401_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0162401_2	PHROG	phrog_873	endolysin	head and packaging
UHGV-0162401_2	UniRef90	UniRef90_A0A373G278	Structural protein P5	NA
UHGV-0162401_2	eggNOG-mapper	411479.BACUNI_00730	NA	NA
UHGV-0162401_3	Structural annotation	PF17994, NF038128	NA	NA
UHGV-0162401_5	PHROG	phrog_30034	NA	unknown function
UHGV-0162401_5	UniRef90	UniRef90_A0A252F2F2	Chitin-binding type-3 domain-containing protein	NA
UHGV-0162401_5	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0162401_6	eggNOG-mapper	226186.BT_4444	NA	NA
UHGV-0162401_7	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0162401_7	eggNOG-mapper	411901.BACCAC_01113	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0162401_8	PHROG	phrog_16490	NA	unknown function
UHGV-0162401_8	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0162401_8	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0162401_9	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0162401_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0162401_9	UniRef90	UniRef90_R5UAW9	Core-binding (CB) domain-containing protein	NA
UHGV-0162401_9	eggNOG-mapper	1122971.BAME01000048_gene4078	Belongs to the 'phage' integrase family	NA
UHGV-0162401_9	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0162401_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0162401_9	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0162401_10	UniRef90	UniRef90_UPI00044FE5B9	helix-turn-helix domain-containing protein	NA
UHGV-0162401_10	eggNOG-mapper	485918.Cpin_3873	NA	NA
UHGV-0162401_10	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0162401_11	eggNOG-mapper	357276.EL88_11570	NA	NA
UHGV-0162401_15	UniRef90	UniRef90_UPI001897603D	DNA-binding response regulator	NA
UHGV-0162401_15	eggNOG-mapper	357276.EL88_11540	response regulator	NA
UHGV-0162401_15	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0162401_15	Structural annotation	PF00196, COG2771	NA	NA
UHGV-0162401_16	eggNOG-mapper	762984.HMPREF9445_00146	NA	NA
UHGV-0162401_17	UniRef90	UniRef90_R5UHG5	PF12964 family protein	NA
UHGV-0162401_17	eggNOG-mapper	694427.Palpr_1583	NA	NA
UHGV-0162401_17	Pfam	PF12964	NA	DUF3853
UHGV-0162401_17	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-0162401_18	PHROG	phrog_3657	NA	unknown function
UHGV-0162401_18	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0162401_18	Structural annotation	PF04404	NA	NA
UHGV-0162401_19	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0162401_19	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162401_19	UniRef90	UniRef90_A0A5M5M9I4	YqaJ viral recombinase family protein	NA
UHGV-0162401_19	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0162401_19	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0162401_19	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-0162401_20	UniRef90	UniRef90_A0A840CR27	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	NA
UHGV-0162401_20	eggNOG-mapper	411901.BACCAC_01189	NA	NA
UHGV-0162401_20	Structural annotation	PF21662, NF038178	NA	NA
UHGV-0162401_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0162401_22	UniRef90	UniRef90_A0A174JNZ9	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	NA
UHGV-0162401_22	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0162401_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0162401_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0162401_22	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0162401_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0162401_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0162401_23	UniRef90	UniRef90_A0A174JGJ7	DNA helicase	NA
UHGV-0162401_23	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0162401_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0162401_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0162401_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0162401_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0162401_24	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0162401_24	eggNOG-mapper	411901.BACCAC_01185	NA	NA
UHGV-0162401_25	Structural annotation	PF13601, MF_01819, NF008565, COG1733	NA	NA
UHGV-0162401_27	PHROG	phrog_28609	NA	unknown function
UHGV-0162401_27	eggNOG-mapper	357276.EL88_11370	NA	NA
UHGV-0162401_29	PHROG	phrog_38368	NA	unknown function
UHGV-0162401_29	eggNOG-mapper	762982.HMPREF9442_01208	NA	NA
UHGV-0162401_30	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0162401_30	UniRef90	UniRef90_A0A1Y4V3G6	ParB domain-containing protein	NA
UHGV-0162401_30	eggNOG-mapper	762968.HMPREF9441_00586	NA	NA
UHGV-0162401_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0162401_30	Pfam	PF14386	NA	DUF4417
UHGV-0162401_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0162401_30	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0162401_32	PHROG	phrog_15125	NA	unknown function
UHGV-0162401_32	UniRef90	UniRef90_F3QSL2	Conserved domain protein	NA
UHGV-0162401_32	eggNOG-mapper	762968.HMPREF9441_00582	NA	NA
UHGV-0162401_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0162401_33	UniRef90	UniRef90_A0A174JFB0	Transposase and inactivated derivatives	NA
UHGV-0162401_33	eggNOG-mapper	445970.ALIPUT_01193	domain protein	NA
UHGV-0162401_33	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0162401_33	COG	COG5410	NA	NA
UHGV-0162401_33	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0162401_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0162401_34	UniRef90	UniRef90_A0A642MCJ9	Phage portal protein	NA
UHGV-0162401_34	eggNOG-mapper	445970.ALIPUT_01192	phage portal protein, SPP1	NA
UHGV-0162401_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162401_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0162401_35	PHROG	phrog_6486	NA	unknown function
UHGV-0162401_35	UniRef90	UniRef90_UPI001F4085BF	antA/AntB antirepressor family protein	NA
UHGV-0162401_35	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-0162401_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0162401_35	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0162401_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0162401_38	UniRef90	UniRef90_A0A174JKW6	Prophage antirepressor	NA
UHGV-0162401_38	eggNOG-mapper	1077285.AGDG01000027_gene1829	BRO family, N-terminal domain	NA
UHGV-0162401_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0162401_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0162401_38	Structural annotation	PF03374, COG3645, COG3617	NA	NA
UHGV-0162401_40	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0162401_40	PHROG	phrog_14295	NA	unknown function
UHGV-0162401_40	UniRef90	UniRef90_A0A174JE48	Chromosome segregation protein	NA
UHGV-0162401_40	eggNOG-mapper	470145.BACCOP_03725	protein involved in control of spindle dynamics together with kar3p K00870	NA
UHGV-0162401_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0162401_40	Structural annotation	PF14235	NA	NA
UHGV-0162401_41	PHROG	phrog_5377	NA	unknown function
UHGV-0162401_41	eggNOG-mapper	1077285.AGDG01000032_gene4183	NA	NA
UHGV-0162401_42	PHROG	phrog_14740	NA	unknown function
UHGV-0162401_42	eggNOG-mapper	762968.HMPREF9441_00570	NA	NA
UHGV-0162401_43	PHROG	phrog_13669	NA	unknown function
UHGV-0162401_43	eggNOG-mapper	1268240.ATFI01000021_gene161	NA	NA
UHGV-0162401_43	Structural annotation	PF20336	NA	NA
UHGV-0162401_44	PHROG	phrog_14600	NA	unknown function
UHGV-0162401_44	UniRef90	UniRef90_R6ZP18	Conserved domain protein	NA
UHGV-0162401_44	eggNOG-mapper	762982.HMPREF9442_01184	NA	NA
UHGV-0162401_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0162401_45	PHROG	phrog_5597	NA	unknown function
UHGV-0162401_45	eggNOG-mapper	1268240.ATFI01000021_gene159	NA	NA
UHGV-0162401_45	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-0162401_46	PHROG	phrog_16482	NA	unknown function
UHGV-0162401_46	eggNOG-mapper	762982.HMPREF9442_01180	NA	NA
UHGV-0162401_46	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0162401_47	PHROG	phrog_7935	NA	unknown function
UHGV-0162401_47	eggNOG-mapper	435591.BDI_0886	NA	NA
UHGV-0162401_47	Pfam	PF20449	NA	DUF6706
UHGV-0162401_47	Structural annotation	PF20449	NA	NA
UHGV-0162401_48	PHROG	phrog_29	major head protein	head and packaging
UHGV-0162401_48	UniRef90	UniRef90_A0A1Y4JJG0	Major capsid protein E	NA
UHGV-0162401_48	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0162401_48	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0162401_48	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0162401_49	PHROG	phrog_9196	NA	unknown function
UHGV-0162401_49	eggNOG-mapper	742767.HMPREF9456_03320	Head fiber protein	NA
UHGV-0162401_49	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0162401_50	PHROG	phrog_5824	NA	unknown function
UHGV-0162401_50	eggNOG-mapper	445970.ALIPUT_00706	NA	NA