UHGV-0162485

Genome information

Genome length 49,012 bps

CDS count 61

Completeness 83.19% (medium-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162485
vOTU ID	vOTU-016896
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_531348
BioSample	SAMN06165108
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.56
Jumbo phage	No

Genome content
Genome length	49,012 bps
GC content	52.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	88.53%
Average CDS length	714.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162485_1	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0162485_1	UniRef90	UniRef90_A0A7X6YCS9	Virulence associated protein	NA
UHGV-0162485_1	eggNOG-mapper	767817.Desgi_4400	NA	NA
UHGV-0162485_1	AcrCatalog	cluster_58247	NA	NA
UHGV-0162485_1	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0162485_1	Structural annotation	PF12224	NA	NA
UHGV-0162485_3	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0162485_3	Structural annotation	PF13230, MF_01931, TIGR03442, COG0121	NA	NA
UHGV-0162485_4	PHROG	phrog_2945	NA	unknown function
UHGV-0162485_5	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0162485_5	UniRef90	UniRef90_A0A6N7STI2	Phage terminase small subunit P27 family	NA
UHGV-0162485_5	eggNOG-mapper	1235800.C819_04044	NA	NA
UHGV-0162485_5	Structural annotation	PF12224	NA	NA
UHGV-0162485_6	Pfam	PF20612	SHOCT domain	SHOCT_2
UHGV-0162485_7	KOfam	K01752	E4.3.1.17, sdaA, sdaB, tdcG; L-serine dehydratase [EC:4.3.1.17]	NA
UHGV-0162485_7	PHROG	phrog_30171	NA	unknown function
UHGV-0162485_7	UniRef90	UniRef90_A0A371JJF0	L-serine dehydratase	NA
UHGV-0162485_7	eggNOG-mapper	1216932.CM240_2742	L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA
UHGV-0162485_7	Pfam	PF03313	Serine dehydratase alpha chain	SDH_alpha
UHGV-0162485_7	COG	COG1760	L-serine deaminase	NA
UHGV-0162485_8	KOfam	K14059	int; integrase	NA
UHGV-0162485_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0162485_8	UniRef90	UniRef90_A0A843J1C1	Tyrosine-type recombinase/integrase	NA
UHGV-0162485_8	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0162485_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0162485_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0162485_8	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0162485_9	UniRef90	UniRef90_A0A133XPC2	Toxin-antitoxin system, toxin component, Fic family	NA
UHGV-0162485_9	eggNOG-mapper	1035196.HMPREF9998_00638	Virulence protein RhuM family	NA
UHGV-0162485_9	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0162485_9	COG	COG3943	NA	NA
UHGV-0162485_9	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0162485_10	PHROG	phrog_16230	replication protein	DNA, RNA and nucleotide metabolism
UHGV-0162485_10	UniRef90	UniRef90_R5D8H2	Phage P1-related protein	NA
UHGV-0162485_10	eggNOG-mapper	649639.Bcell_2719	NA	NA
UHGV-0162485_11	PHROG	phrog_3732	NA	unknown function
UHGV-0162485_11	UniRef90	UniRef90_UPI000FD7F082	NA	NA
UHGV-0162485_11	eggNOG-mapper	398513.BBNG_00815	NA	NA
UHGV-0162485_11	Pfam	PF12686	NA	DUF3800
UHGV-0162485_11	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-0162485_12	PHROG	phrog_1847	NA	unknown function
UHGV-0162485_12	UniRef90	UniRef90_R9NE11	T5orf172 domain-containing protein	NA
UHGV-0162485_12	eggNOG-mapper	1235798.C817_00618	NA	NA
UHGV-0162485_12	Pfam	PF13250	NA	DUF4041
UHGV-0162485_12	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0162485_12	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0162485_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0162485_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0162485_13	UniRef90	UniRef90_S7HQG8	LexA repressor family protein	NA
UHGV-0162485_13	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-0162485_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162485_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0162485_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0162485_13	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0162485_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0162485_14	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0162485_14	UniRef90	UniRef90_UPI0018C53478	helix-turn-helix domain-containing protein	NA
UHGV-0162485_14	eggNOG-mapper	1280668.ATVT01000007_gene1191	Tetratricopeptide repeat	NA
UHGV-0162485_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162485_14	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0162485_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0162485_15	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0162485_15	eggNOG-mapper	632518.Calow_0810	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162485_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0162485_15	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0162485_15	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0162485_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0162485_20	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162485_20	UniRef90	UniRef90_A0A8G0USS8	PD-(D/E)XK nuclease family protein	NA
UHGV-0162485_20	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0162485_20	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0162485_21	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162485_22	PHROG	phrog_3657	NA	unknown function
UHGV-0162485_22	eggNOG-mapper	580332.Slit_1947	NA	NA
UHGV-0162485_22	Structural annotation	PF04404	NA	NA
UHGV-0162485_23	Pfam	PF19808	NA	DUF6291
UHGV-0162485_23	Structural annotation	PF19808	NA	NA
UHGV-0162485_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0162485_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0162485_24	UniRef90	UniRef90_U4Q8H1	DnaB domain protein helicase domain protein	NA
UHGV-0162485_24	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0162485_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0162485_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0162485_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0162485_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0162485_25	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0162485_25	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0162485_25	eggNOG-mapper	1231336.L248_2133	NA	NA
UHGV-0162485_26	PHROG	phrog_1029	NA	unknown function
UHGV-0162485_26	eggNOG-mapper	1497679.EP56_05610	NA	NA
UHGV-0162485_26	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0162485_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0162485_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0162485_27	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0162485_27	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0162485_27	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0162485_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0162485_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0162485_27	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0162485_28	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0162485_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0162485_28	UniRef90	UniRef90_A0A1W2ATY0	DNA methylase	NA
UHGV-0162485_28	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0162485_28	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0162485_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0162485_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0162485_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0162485_28	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0162485_29	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0162485_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0162485_29	UniRef90	UniRef90_A0A1Q6PWT9	PAPS_reduct domain-containing protein	NA
UHGV-0162485_29	eggNOG-mapper	742733.HMPREF9469_00225	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0162485_29	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0162485_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0162485_29	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0162485_30	PHROG	phrog_2045	NA	unknown function
UHGV-0162485_30	UniRef90	UniRef90_UPI0002D16ED2	NA	NA
UHGV-0162485_30	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0162485_30	Pfam	PF07505	NA	DUF5131
UHGV-0162485_30	COG	COG4422	NA	NA
UHGV-0162485_30	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0162485_31	PHROG	phrog_11947	NA	unknown function
UHGV-0162485_32	Structural annotation	PF02917, NF041482, COG1859	NA	NA
UHGV-0162485_33	Structural annotation	PF10694	NA	NA
UHGV-0162485_35	PHROG	phrog_2613	NA	unknown function
UHGV-0162485_35	UniRef90	UniRef90_A0A166S860	Phage tail protein	NA
UHGV-0162485_35	eggNOG-mapper	1396141.BATP01000003_gene5021	Macro domain	NA
UHGV-0162485_35	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0162485_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0162485_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0162485_36	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-0162485_36	eggNOG-mapper	1200792.AKYF01000001_gene4058	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0162485_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0162485_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0162485_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0162485_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0162485_36	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0162485_38	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0162485_39	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0162485_39	UniRef90	UniRef90_S0JJL2	HTH cro/C1-type domain-containing protein	NA
UHGV-0162485_39	eggNOG-mapper	1235790.C805_01299	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0162485_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0162485_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0162485_39	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0162485_40	PHROG	phrog_6231	NA	unknown function
UHGV-0162485_40	UniRef90	UniRef90_A0A2X2UUS2	Nmad4 domain-containing protein	NA
UHGV-0162485_40	eggNOG-mapper	1235802.C823_05280	NA	NA
UHGV-0162485_40	Pfam	PF18756	Nucleotide modification associated domain 4	Nmad4
UHGV-0162485_40	Structural annotation	PF18756	NA	NA
UHGV-0162485_42	PHROG	phrog_1362	NA	unknown function
UHGV-0162485_42	UniRef90	UniRef90_A0A3G2R528	NA	NA
UHGV-0162485_42	eggNOG-mapper	742740.HMPREF9474_01316	NA	NA
UHGV-0162485_42	Pfam	PF06067	NA	DUF932
UHGV-0162485_42	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0162485_44	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0162485_44	UniRef90	UniRef90_A0A417WD62	DNA methylase	NA
UHGV-0162485_44	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0162485_44	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0162485_44	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0162485_44	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0162485_44	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0162485_45	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0162485_45	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0162485_45	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0162485_45	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0162485_45	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0162485_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162485_47	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0162485_47	UniRef90	UniRef90_UPI000839A96B	PBSX family phage terminase large subunit	NA
UHGV-0162485_47	eggNOG-mapper	1395587.P364_0122085	Phage terminase large subunit	NA
UHGV-0162485_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0162485_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162485_47	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0162485_48	PHROG	phrog_533	portal protein	head and packaging
UHGV-0162485_48	UniRef90	UniRef90_A0A1V6EUU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0162485_48	eggNOG-mapper	66875.JODY01000010_gene1615	NA	NA
UHGV-0162485_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162485_48	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0162485_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0162485_49	UniRef90	UniRef90_A0A3Q9B9A5	Capsid protein	NA
UHGV-0162485_49	eggNOG-mapper	66875.JODY01000010_gene1616	Phage minor capsid protein 2	NA
UHGV-0162485_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0162485_49	Structural annotation	PF06152	NA	NA
UHGV-0162485_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0162485_52	UniRef90	UniRef90_A0A847K5G0	Scaffolding protein	NA
UHGV-0162485_52	eggNOG-mapper	883114.HMPREF9709_01195	Phage minor structural protein GP20	NA
UHGV-0162485_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0162485_52	Structural annotation	PF06810	NA	NA
UHGV-0162485_53	PHROG	phrog_10	major head protein	head and packaging
UHGV-0162485_53	UniRef90	UniRef90_A0A3C1DEW5	Phage major capsid protein	NA
UHGV-0162485_53	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0162485_53	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0162485_53	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0162485_53	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162485_53	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162485_54	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0162485_56	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0162485_56	UniRef90	UniRef90_UPI001D0B0A03	minor capsid protein	NA
UHGV-0162485_56	eggNOG-mapper	33898.JRHJ01000076_gene423	NA	NA
UHGV-0162485_56	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0162485_56	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0162485_57	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0162485_57	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0162485_57	Structural annotation	PF12691	NA	NA
UHGV-0162485_58	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0162485_58	UniRef90	UniRef90_A0A847K3Y2	BIG2 domain-containing protein	NA
UHGV-0162485_58	eggNOG-mapper	471874.PROSTU_01912	domain, Protein	NA
UHGV-0162485_58	COG	COG5492	NA	NA
UHGV-0162485_58	Structural annotation	PF02368, PF06199, MF_04116, TIGR02126, TIGR04225, COG5437	NA	NA
UHGV-0162485_60	PHROG	phrog_19074	NA	unknown function
UHGV-0162485_60	eggNOG-mapper	1567011.A0A0A7S163_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0162485_60	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0162485_60	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0162485_60	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA