UHGV-0162526

Genome information

Genome length 41,675 bps

CDS count 64

Completeness 92.33% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162526
vOTU ID	vOTU-070098
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_555986
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.08
Jumbo phage	No

Genome content
Genome length	41,675 bps
GC content	41.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	93.07%
Average CDS length	609.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162526_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0162526_1	PHROG	phrog_7	endolysin	lysis
UHGV-0162526_1	UniRef90	UniRef90_A0A6N3H7R7	Lysozyme	NA
UHGV-0162526_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0162526_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0162526_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0162526_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0162526_1	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0162526_2	PHROG	phrog_199	holin	lysis
UHGV-0162526_2	UniRef90	UniRef90_C7GBZ0	Toxin secretion/phage lysis holin	NA
UHGV-0162526_2	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-0162526_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0162526_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0162526_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0162526_4	PHROG	phrog_17196	kinase	other
UHGV-0162526_4	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0162526_4	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0162526_6	PHROG	phrog_18190	NA	unknown function
UHGV-0162526_6	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-0162526_6	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0162526_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0162526_6	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0162526_7	PHROG	phrog_1194	NA	unknown function
UHGV-0162526_7	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0162526_7	Pfam	PF20458	NA	DUF6711
UHGV-0162526_7	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0162526_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0162526_8	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0162526_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0162526_9	PHROG	phrog_706	NA	unknown function
UHGV-0162526_9	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0162526_9	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0162526_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0162526_9	Structural annotation	PF06854	NA	NA
UHGV-0162526_10	PHROG	phrog_11299	NA	unknown function
UHGV-0162526_10	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0162526_10	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0162526_10	Pfam	PF20378	NA	DUF6673
UHGV-0162526_10	Structural annotation	PF10666	NA	NA
UHGV-0162526_11	PHROG	phrog_3099	NA	unknown function
UHGV-0162526_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0162526_12	PHROG	phrog_3266	tail completion	connector
UHGV-0162526_12	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0162526_12	Structural annotation	PF12691	NA	NA
UHGV-0162526_13	PHROG	phrog_3366	NA	unknown function
UHGV-0162526_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0162526_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0162526_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0162526_14	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0162526_15	PHROG	phrog_247	major head protein	head and packaging
UHGV-0162526_15	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0162526_15	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0162526_15	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0162526_15	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0162526_15	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0162526_16	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0162526_18	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0162526_18	UniRef90	UniRef90_A0A413YTH5	ORF6N domain-containing protein	NA
UHGV-0162526_18	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0162526_18	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0162526_18	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0162526_19	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0162526_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0162526_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0162526_20	UniRef90	UniRef90_A0A413YTG4	XRE family transcriptional regulator	NA
UHGV-0162526_20	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162526_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0162526_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162526_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0162526_22	UniRef90	UniRef90_A0A413YTH6	ACB domain-containing protein	NA
UHGV-0162526_23	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0162526_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0162526_24	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0162526_24	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0162526_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0162526_24	COG	COG2369	NA	NA
UHGV-0162526_24	Structural annotation	PF06152	NA	NA
UHGV-0162526_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0162526_25	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0162526_25	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0162526_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0162526_25	Structural annotation	PF11114	NA	NA
UHGV-0162526_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0162526_26	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0162526_26	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0162526_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0162526_27	PHROG	phrog_1233	NA	unknown function
UHGV-0162526_27	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0162526_27	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0162526_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162526_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0162526_28	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0162526_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0162526_28	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0162526_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0162526_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0162526_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162526_28	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0162526_29	PHROG	phrog_9479	NA	unknown function
UHGV-0162526_29	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0162526_29	Structural annotation	PF15529	NA	NA
UHGV-0162526_31	PHROG	phrog_8680	NA	unknown function
UHGV-0162526_31	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0162526_31	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0162526_31	Pfam	PF14386	NA	DUF4417
UHGV-0162526_31	Structural annotation	PF14386	NA	NA
UHGV-0162526_32	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-0162526_33	UniRef90	UniRef90_A0A413SPC3	NA	NA
UHGV-0162526_33	Pfam	PF20037	NA	DUF6440
UHGV-0162526_36	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0162526_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0162526_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0162526_38	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0162526_38	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0162526_38	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0162526_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0162526_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0162526_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0162526_39	PHROG	phrog_2232	NA	unknown function
UHGV-0162526_39	UniRef90	UniRef90_UPI001D087871	NA	NA
UHGV-0162526_39	eggNOG-mapper	633697.EubceDRAFT1_1462	NA	NA
UHGV-0162526_39	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0162526_39	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0162526_41	PHROG	phrog_874	NA	unknown function
UHGV-0162526_41	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0162526_41	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0162526_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0162526_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0162526_42	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162526_42	UniRef90	UniRef90_A0A413SFY3	HNH endonuclease	NA
UHGV-0162526_42	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0162526_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0162526_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0162526_42	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0162526_43	PHROG	phrog_20593	NA	unknown function
UHGV-0162526_45	PHROG	phrog_8684	NA	unknown function
UHGV-0162526_45	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0162526_45	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0162526_45	Pfam	PF09643	YopX protein	YopX
UHGV-0162526_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0162526_46	UniRef90	UniRef90_C7GC26	NA	NA
UHGV-0162526_46	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0162526_46	Pfam	PF04448	NA	DUF551
UHGV-0162526_49	Structural annotation	PF17399	NA	NA
UHGV-0162526_53	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0162526_53	UniRef90	UniRef90_A0A3E5EKT4	NA	NA
UHGV-0162526_53	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0162526_53	Pfam	PF06048	NA	DUF927
UHGV-0162526_53	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0162526_53	COG	COG5519	NA	NA
UHGV-0162526_53	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0162526_54	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0162526_54	PHROG	phrog_11992	NA	unknown function
UHGV-0162526_54	UniRef90	UniRef90_C7GC31	CHC2 zinc finger domain protein	NA
UHGV-0162526_54	eggNOG-mapper	1298920.KI911353_gene4867	CHC2 zinc finger	NA
UHGV-0162526_54	PADLOC	drt-UG29	DRT	DRT
UHGV-0162526_54	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0162526_54	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0162526_55	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0162526_55	UniRef90	UniRef90_A0A7X4ZBJ6	ERCC4 domain-containing protein	NA
UHGV-0162526_55	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0162526_55	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0162526_55	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0162526_56	PHROG	phrog_18107	NA	unknown function
UHGV-0162526_56	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0162526_56	Structural annotation	PF05037	NA	NA
UHGV-0162526_57	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0162526_57	UniRef90	UniRef90_A0A391PHL2	ATP-binding protein	NA
UHGV-0162526_57	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0162526_57	Pfam	PF13479	AAA domain	AAA_24
UHGV-0162526_57	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0162526_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0162526_59	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0162526_59	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0162526_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0162526_59	Structural annotation	PF05565	NA	NA
UHGV-0162526_61	Structural annotation	PF07202	NA	NA
UHGV-0162526_62	Structural annotation	PF21596, TIGR03081	NA	NA
UHGV-0162526_63	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0162526_63	UniRef90	UniRef90_A0A3E4PTF1	HTH-type transcriptional regulator ImmR	NA
UHGV-0162526_63	eggNOG-mapper	742765.HMPREF9457_01448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162526_63	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0162526_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA