UHGV-0162541

Genome information

Genome length 36,844 bps

CDS count 56

Completeness 98.80% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162541
vOTU ID	vOTU-010729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_503438
BioSample	SAMN06164793
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.71
Jumbo phage	No

Genome content
Genome length	36,844 bps
GC content	40.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.93%
Average CDS length	629.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162541_1	KOfam	K14059	int; integrase	NA
UHGV-0162541_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0162541_1	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0162541_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0162541_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0162541_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0162541_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0162541_2	UniRef90	UniRef90_UPI00066C9950	SAP domain-containing protein	NA
UHGV-0162541_2	eggNOG-mapper	1282664.H354_06896	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0162541_2	Pfam	PF02037	SAP domain	SAP
UHGV-0162541_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0162541_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0162541_3	UniRef90	UniRef90_A0A822LS29	HTH cro/C1-type domain-containing protein	NA
UHGV-0162541_3	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0162541_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162541_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0162541_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0162541_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0162541_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0162541_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0162541_4	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0162541_4	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0162541_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0162541_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162541_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0162541_8	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0162541_9	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0162541_9	Structural annotation	PF20063	NA	NA
UHGV-0162541_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162541_11	UniRef90	UniRef90_A0A416VA03	Recombinase	NA
UHGV-0162541_11	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0162541_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0162541_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0162541_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0162541_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0162541_13	PHROG	phrog_674	NA	unknown function
UHGV-0162541_13	UniRef90	UniRef90_A0A417W7T9	NA	NA
UHGV-0162541_13	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0162541_13	Pfam	PF07083	NA	DUF1351
UHGV-0162541_13	Structural annotation	PF07083	NA	NA
UHGV-0162541_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0162541_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0162541_15	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0162541_15	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0162541_15	Pfam	PF03837	RecT family	RecT
UHGV-0162541_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0162541_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0162541_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0162541_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0162541_16	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0162541_16	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-0162541_16	Pfam	PF06356	NA	DUF1064
UHGV-0162541_16	Structural annotation	PF06356	NA	NA
UHGV-0162541_17	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0162541_18	PHROG	phrog_16304	NA	unknown function
UHGV-0162541_18	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0162541_18	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0162541_18	Pfam	PF19808	NA	DUF6291
UHGV-0162541_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0162541_18	Structural annotation	PF19808	NA	NA
UHGV-0162541_20	PHROG	phrog_9804	NA	unknown function
UHGV-0162541_20	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0162541_20	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0162541_20	AcrCatalog	cluster_137185	NA	NA
UHGV-0162541_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0162541_20	Structural annotation	PF11417	NA	NA
UHGV-0162541_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0162541_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0162541_23	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0162541_23	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0162541_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0162541_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0162541_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0162541_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0162541_25	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0162541_26	UniRef90	UniRef90_UPI000E7693A4	helix-turn-helix domain-containing protein	NA
UHGV-0162541_28	PHROG	phrog_8684	NA	unknown function
UHGV-0162541_28	UniRef90	UniRef90_UPI00156EBF78	YopX family protein	NA
UHGV-0162541_28	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0162541_28	Pfam	PF09643	YopX protein	YopX
UHGV-0162541_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0162541_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0162541_31	PHROG	phrog_17690	NA	unknown function
UHGV-0162541_31	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0162541_31	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0162541_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0162541_32	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0162541_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0162541_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0162541_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0162541_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0162541_34	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-0162541_34	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0162541_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0162541_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0162541_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0162541_35	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0162541_35	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-0162541_35	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0162541_35	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0162541_35	COG	COG5410	NA	NA
UHGV-0162541_35	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0162541_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0162541_36	UniRef90	UniRef90_A0A3R6UWR4	Phage portal protein	NA
UHGV-0162541_36	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0162541_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162541_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0162541_39	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0162541_39	UniRef90	UniRef90_A0A416ZY09	Phage_Mu_F domain-containing protein	NA
UHGV-0162541_39	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0162541_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0162541_39	COG	COG2369	NA	NA
UHGV-0162541_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0162541_40	Structural annotation	PF11344	NA	NA
UHGV-0162541_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0162541_41	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0162541_41	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0162541_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0162541_41	Structural annotation	PF06810	NA	NA
UHGV-0162541_42	PHROG	phrog_212	major head protein	head and packaging
UHGV-0162541_42	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0162541_42	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0162541_42	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0162541_44	PHROG	phrog_1236	head protein	head and packaging
UHGV-0162541_44	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0162541_44	Structural annotation	PF05135	NA	NA
UHGV-0162541_45	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0162541_45	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0162541_45	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0162541_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0162541_46	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0162541_46	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0162541_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0162541_47	PHROG	phrog_957	head protein	head and packaging
UHGV-0162541_47	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0162541_47	Structural annotation	PF12691	NA	NA
UHGV-0162541_48	PHROG	phrog_885	major tail protein	tail
UHGV-0162541_48	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0162541_48	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0162541_49	PHROG	phrog_1021	NA	unknown function
UHGV-0162541_49	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0162541_50	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0162541_51	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0162541_51	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0162541_51	COG	COG5412	Phage-related protein	NA
UHGV-0162541_51	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0162541_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0162541_52	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0162541_52	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0162541_52	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0162541_53	PHROG	phrog_538	minor tail protein	tail
UHGV-0162541_53	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0162541_53	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0162541_53	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0162541_53	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0162541_54	PHROG	phrog_9994	NA	unknown function
UHGV-0162541_54	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0162541_54	Structural annotation	PF20747	NA	NA
UHGV-0162541_55	PHROG	phrog_199	holin	lysis
UHGV-0162541_55	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0162541_55	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0162541_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0162541_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0162541_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0162541_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0162541_56	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0162541_56	PHROG	phrog_9589	endolysin	lysis
UHGV-0162541_56	UniRef90	UniRef90_A0A3R6X4L7	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0162541_56	eggNOG-mapper	428125.CLOLEP_00637	Glycosyl hydrolase	NA
UHGV-0162541_56	Pfam	PF05257	CHAP domain	CHAP
UHGV-0162541_56	Pfam	PF01476	LysM domain	LysM
UHGV-0162541_56	COG	COG1388	LysM repeat	NA
UHGV-0162541_56	Structural annotation	PF01476, PF10030, MF_02014, TIGR02594, NF004974, COG1388, COG4322	NA	NA