UHGV-0162710

Genome information

Genome length 25,777 bps

CDS count 35

Completeness 66.48% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162710
vOTU ID	vOTU-028094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_529866
BioSample	SAMN06164671
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.98
Jumbo phage	No

Genome content
Genome length	25,777 bps
GC content	38.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.21%
Average CDS length	667.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162710_1	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0162710_1	UniRef90	UniRef90_UPI001A9B9757	phBC6A51 family helix-turn-helix protein	NA
UHGV-0162710_1	eggNOG-mapper	1158602.I590_00652	NA	NA
UHGV-0162710_2	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0162710_2	UniRef90	UniRef90_A0A1A7T4D4	Phage terminase large subunit	NA
UHGV-0162710_2	eggNOG-mapper	1158602.I590_00651	Terminase-like family	NA
UHGV-0162710_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0162710_2	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0162710_2	COG	COG5410	NA	NA
UHGV-0162710_2	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0162710_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0162710_3	UniRef90	UniRef90_R2VI47	SPP1 family phage portal protein	NA
UHGV-0162710_3	eggNOG-mapper	1158614.I592_02432	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0162710_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0162710_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0162710_4	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0162710_4	UniRef90	UniRef90_A0A7U8FBT1	Minor head protein	NA
UHGV-0162710_4	eggNOG-mapper	1158614.I592_02431	cell adhesion	NA
UHGV-0162710_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0162710_4	COG	COG2369	NA	NA
UHGV-0162710_4	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0162710_6	PHROG	phrog_5859	NA	unknown function
UHGV-0162710_6	eggNOG-mapper	1158614.I592_02430	NA	NA
UHGV-0162710_6	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0162710_8	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0162710_8	UniRef90	UniRef90_A0A1Y3HWY1	NA	NA
UHGV-0162710_8	eggNOG-mapper	1158614.I592_02428	NA	NA
UHGV-0162710_8	Pfam	PF14265	NA	DUF4355
UHGV-0162710_8	Structural annotation	PF14265	NA	NA
UHGV-0162710_9	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0162710_9	UniRef90	UniRef90_UPI001E4D6682	NA	NA
UHGV-0162710_9	eggNOG-mapper	1158614.I592_02427	NA	NA
UHGV-0162710_9	Pfam	PF17236	NA	DUF5309
UHGV-0162710_9	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0162710_10	PHROG	phrog_8832	NA	unknown function
UHGV-0162710_10	eggNOG-mapper	1158614.I592_02426	NA	NA
UHGV-0162710_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0162710_11	eggNOG-mapper	1158614.I592_02425	NA	NA
UHGV-0162710_12	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0162710_12	UniRef90	UniRef90_R3KCN7	50S ribosomal protein L23	NA
UHGV-0162710_12	eggNOG-mapper	1158614.I592_02424	NA	NA
UHGV-0162710_12	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0162710_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0162710_13	UniRef90	UniRef90_UPI0018832E9E	HK97 gp10 family phage protein	NA
UHGV-0162710_13	eggNOG-mapper	1158614.I592_02423	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0162710_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0162710_13	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0162710_14	PHROG	phrog_525	NA	unknown function
UHGV-0162710_14	eggNOG-mapper	1158614.I592_02422	NA	NA
UHGV-0162710_14	Pfam	PF20765	NA	DUF6838
UHGV-0162710_14	Structural annotation	PF20765	NA	NA
UHGV-0162710_15	PHROG	phrog_88	major tail protein	tail
UHGV-0162710_15	UniRef90	UniRef90_R2Y4S4	Phi13 family phage major tail protein	NA
UHGV-0162710_15	eggNOG-mapper	1158614.I592_02421	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0162710_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0162710_15	COG	COG5492	NA	NA
UHGV-0162710_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0162710_16	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0162710_16	eggNOG-mapper	1158604.I591_00410	NA	NA
UHGV-0162710_17	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0162710_17	UniRef90	UniRef90_A0A7H4KLM2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0162710_17	eggNOG-mapper	1158614.I592_02419	Phage tail tape measure protein, TP901 family	NA
UHGV-0162710_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0162710_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0162710_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0162710_17	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0162710_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0162710_18	UniRef90	UniRef90_UPI00065E7C49	tail protein	NA
UHGV-0162710_18	eggNOG-mapper	1158614.I592_02418	tail component	NA
UHGV-0162710_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0162710_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0162710_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0162710_19	UniRef90	UniRef90_R2VI60	Phage minor structural protein	NA
UHGV-0162710_19	eggNOG-mapper	1158614.I592_02417	Prophage endopeptidase tail	NA
UHGV-0162710_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0162710_19	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0162710_19	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0162710_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0162710_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0162710_19	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0162710_20	PHROG	phrog_11857	NA	unknown function
UHGV-0162710_20	UniRef90	UniRef90_UPI001369F4F3	CHAP domain-containing protein	NA
UHGV-0162710_20	eggNOG-mapper	1158602.I590_02577	Phage minor structural protein	NA
UHGV-0162710_20	COG	COG4926	Phage-related protein	NA
UHGV-0162710_20	Structural annotation	COG3942	NA	NA
UHGV-0162710_21	PHROG	phrog_8913	minor head protein	head and packaging
UHGV-0162710_21	UniRef90	UniRef90_A0A1L8WTQ1	BppU_IgG domain-containing protein	NA
UHGV-0162710_21	eggNOG-mapper	1158602.I590_02578	NA	NA
UHGV-0162710_21	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0162710_21	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0162710_21	Structural annotation	PF10651, PF18667, NF040788, COG5513	NA	NA
UHGV-0162710_22	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0162710_22	PHROG	phrog_341	major tail protein	tail
UHGV-0162710_22	UniRef90	UniRef90_R2NYH8	Fibronectin type-III domain-containing protein	NA
UHGV-0162710_22	eggNOG-mapper	1158602.I590_02579	Bacterial Ig-like domain 2	NA
UHGV-0162710_22	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0162710_22	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0162710_22	COG	COG5492	NA	NA
UHGV-0162710_22	Structural annotation	PF02368, PF07495, MF_04116, COG5492	NA	NA
UHGV-0162710_23	PHROG	phrog_35525	NA	unknown function
UHGV-0162710_23	UniRef90	UniRef90_R2P1E8	Fibronectin type-III domain-containing protein	NA
UHGV-0162710_23	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0162710_24	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0162710_24	eggNOG-mapper	1158602.I590_02581	NA	NA
UHGV-0162710_25	PHROG	phrog_7298	NA	unknown function
UHGV-0162710_25	eggNOG-mapper	1158602.I590_02582	NA	NA
UHGV-0162710_26	PHROG	phrog_1382	NA	unknown function
UHGV-0162710_26	eggNOG-mapper	1158602.I590_02583	NA	NA
UHGV-0162710_26	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0162710_26	Structural annotation	NF040910	NA	NA
UHGV-0162710_27	PHROG	phrog_199	holin	lysis
UHGV-0162710_27	UniRef90	UniRef90_R2NYI3	Toxin secretion/phage lysis holin	NA
UHGV-0162710_27	eggNOG-mapper	1158602.I590_02584	Bacteriophage holin family	NA
UHGV-0162710_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0162710_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0162710_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0162710_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0162710_28	PHROG	phrog_32897	NA	unknown function
UHGV-0162710_28	eggNOG-mapper	1158602.I590_02585	NA	NA
UHGV-0162710_29	PHROG	phrog_13463	endolysin	lysis
UHGV-0162710_29	UniRef90	UniRef90_R2RM83	NlpC/P60 domain-containing protein	NA
UHGV-0162710_29	eggNOG-mapper	1158602.I590_02586	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0162710_29	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0162710_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0162710_29	Structural annotation	PF05382, TIGR02219, COG0791	NA	NA
UHGV-0162710_30	PHROG	phrog_35079	NA	unknown function
UHGV-0162710_31	PHROG	phrog_3374	NA	unknown function
UHGV-0162710_31	UniRef90	UniRef90_A0A086Z1M6	NA	NA
UHGV-0162710_31	eggNOG-mapper	1158602.I590_02588	NA	NA
UHGV-0162710_32	PHROG	phrog_37326	NA	unknown function
UHGV-0162710_32	UniRef90	UniRef90_A0A7H4KPR8	LysM domain-containing protein	NA
UHGV-0162710_32	eggNOG-mapper	1158602.I590_02589	LysM domain	NA
UHGV-0162710_32	Pfam	PF01476	LysM domain	LysM
UHGV-0162710_32	COG	COG1388	LysM repeat	NA
UHGV-0162710_33	PHROG	phrog_27044	NA	unknown function
UHGV-0162710_33	UniRef90	UniRef90_UPI00135A4CCE	QueT transporter family protein	NA
UHGV-0162710_33	eggNOG-mapper	1158602.I590_00037	QueT transporter	NA
UHGV-0162710_33	Pfam	PF06177	QueT transporter	QueT
UHGV-0162710_33	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0162710_34	KOfam	K04767	acuB; acetoin utilization protein AcuB	NA
UHGV-0162710_34	UniRef90	UniRef90_A0A3D9A0I9	CBS domain-containing protein	NA
UHGV-0162710_34	eggNOG-mapper	1158602.I590_00036	Domain in cystathionine beta-synthase and other proteins.	NA
UHGV-0162710_34	Pfam	PF00571	CBS domain	CBS
UHGV-0162710_34	NCBIFam	NF038387.1	cyclic di-AMP binding protein CbpA	NA
UHGV-0162710_34	COG	COG0517	CBS domain	NA
UHGV-0162710_35	UniRef90	UniRef90_A0A6I7Z8E3	50S ribosomal protein L33	NA
UHGV-0162710_35	eggNOG-mapper	1140002.I570_03211	Belongs to the bacterial ribosomal protein bL33 family	NA
UHGV-0162710_35	Pfam	PF00471	Ribosomal protein L33	Ribosomal_L33
UHGV-0162710_35	NCBIFam	NF001764.0	50S ribosomal protein L33	NA
UHGV-0162710_35	COG	COG0267	Ribosomal protein L33	NA