UHGV-0162789

Genome information

Genome length 23,373 bps

CDS count 25

Completeness 62.55% (medium-quality)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162789
vOTU ID	vOTU-028099
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541008
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.09
Jumbo phage	No

Genome content
Genome length	23,373 bps
GC content	30.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	94.36%
Average CDS length	886.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162789_2	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0162789_2	UniRef90	UniRef90_UPI001B8D6F8B	replication initiator protein A	NA
UHGV-0162789_2	eggNOG-mapper	469618.FVAG_00786	DnaD domain protein	NA
UHGV-0162789_2	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0162789_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0162789_3	PHROG	phrog_10105	NA	unknown function
UHGV-0162789_3	UniRef90	UniRef90_H1PVQ0	NA	NA
UHGV-0162789_3	eggNOG-mapper	1120963.KB894501_gene315	NA	NA
UHGV-0162789_3	Pfam	PF20081	NA	DUF6475
UHGV-0162789_3	Structural annotation	PF20081	NA	NA
UHGV-0162789_4	PHROG	phrog_918	NA	unknown function
UHGV-0162789_4	UniRef90	UniRef90_UPI001F22DD3C	NA	NA
UHGV-0162789_4	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0162789_4	Pfam	PF19791	NA	DUF6275
UHGV-0162789_4	Structural annotation	PF19791	NA	NA
UHGV-0162789_6	PHROG	phrog_824	NA	unknown function
UHGV-0162789_6	UniRef90	UniRef90_UPI001F37EF42	VRR-NUC domain-containing protein	NA
UHGV-0162789_6	eggNOG-mapper	469618.FVAG_00788	VRR_NUC	NA
UHGV-0162789_6	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0162789_8	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0162789_8	UniRef90	UniRef90_UPI001F2047AC	helix-turn-helix domain-containing protein	NA
UHGV-0162789_8	eggNOG-mapper	469616.FMAG_01960	NA	NA
UHGV-0162789_8	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0162789_8	COG	COG5484	NA	NA
UHGV-0162789_8	Structural annotation	PF13384, NF040595, COG3677	NA	NA
UHGV-0162789_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0162789_9	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0162789_9	UniRef90	UniRef90_UPI001B8C17F0	PBSX family phage terminase large subunit	NA
UHGV-0162789_9	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0162789_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0162789_9	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0162789_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0162789_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0162789_9	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0162789_10	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0162789_12	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0162789_12	UniRef90	UniRef90_UPI001F2DCBDE	portal protein	NA
UHGV-0162789_12	eggNOG-mapper	469604.HMPREF0946_00811	Bacteriophage head to tail connecting protein	NA
UHGV-0162789_12	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0162789_12	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0162789_15	UniRef90	UniRef90_UPI001B8B5011	phage major capsid protein	NA
UHGV-0162789_15	Structural annotation	PF19821, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162789_16	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0162789_16	PHROG	phrog_11541	NA	unknown function
UHGV-0162789_16	eggNOG-mapper	1476973.JMMB01000004_gene3431	PFAM GDSL-like Lipase Acylhydrolase	NA
UHGV-0162789_16	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0162789_16	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0162789_18	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0162789_18	PHROG	phrog_7	endolysin	lysis
UHGV-0162789_18	UniRef90	UniRef90_UPI001F2C0496	lysozyme	NA
UHGV-0162789_18	eggNOG-mapper	1095743.HMPREF1054_2062	Phage lysozyme	NA
UHGV-0162789_18	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0162789_18	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0162789_18	HAMAP	MF_04110	Endolysin	NA
UHGV-0162789_18	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0162789_19	eggNOG-mapper	469616.FMAG_00543	NA	NA
UHGV-0162789_20	PHROG	phrog_199	holin	lysis
UHGV-0162789_20	UniRef90	UniRef90_UPI0019579524	phage holin family protein	NA
UHGV-0162789_20	eggNOG-mapper	469616.FMAG_01750	Bacteriophage holin family	NA
UHGV-0162789_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0162789_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0162789_20	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0162789_21	eggNOG-mapper	469604.HMPREF0946_00801	NA	NA
UHGV-0162789_21	Structural annotation	PF17212	NA	NA
UHGV-0162789_22	eggNOG-mapper	469604.HMPREF0946_00800	NA	NA
UHGV-0162789_22	Structural annotation	PF10282, MF_00923, TIGR03300, COG1520	NA	NA