UHGV-0162819

Genome information

Genome length 37,594 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9580

Prediction confidence Confident

Genome information
Genome ID	UHGV-0162819
vOTU ID	vOTU-068060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_535050
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9580
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.9
Jumbo phage	No

Genome content
Genome length	37,594 bps
GC content	35.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.07%
Average CDS length	703.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162819_3	PHROG	phrog_18108	NA	unknown function
UHGV-0162819_3	Structural annotation	PF07443	NA	NA
UHGV-0162819_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0162819_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0162819_4	UniRef90	UniRef90_UPI001E5635E3	recombinase family protein	NA
UHGV-0162819_4	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-0162819_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0162819_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0162819_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0162819_4	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0162819_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0162819_5	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0162819_5	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0162819_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0162819_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0162819_5	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0162819_6	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0162819_6	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0162819_6	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0162819_6	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-0162819_6	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0162819_6	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0162819_6	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0162819_6	COG	COG0338	DNA-adenine methylase	NA
UHGV-0162819_6	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0162819_7	PHROG	phrog_443	holin	lysis
UHGV-0162819_7	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0162819_7	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0162819_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0162819_7	Structural annotation	PF16945	NA	NA
UHGV-0162819_8	PHROG	phrog_1863	NA	unknown function
UHGV-0162819_8	UniRef90	UniRef90_UPI001E345E1F	hemolysin XhlA family protein	NA
UHGV-0162819_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0162819_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0162819_9	PHROG	phrog_20388	endolysin	lysis
UHGV-0162819_9	UniRef90	UniRef90_UPI00189BF4F0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162819_9	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162819_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0162819_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0162819_9	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0162819_10	UniRef90	UniRef90_R6MQZ9	Two-component system sensor histidine kinase	NA
UHGV-0162819_11	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0162819_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0162819_12	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0162819_12	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0162819_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0162819_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0162819_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0162819_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0162819_13	UniRef90	UniRef90_UPI000BB5198E	phage tail family protein	NA
UHGV-0162819_13	eggNOG-mapper	272623.L63101	phage tail	NA
UHGV-0162819_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0162819_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0162819_14	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0162819_14	PHROG	phrog_5218	NA	unknown function
UHGV-0162819_14	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0162819_14	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0162819_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0162819_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0162819_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0162819_16	Structural annotation	PF11836	NA	NA
UHGV-0162819_17	PHROG	phrog_88	major tail protein	tail
UHGV-0162819_17	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0162819_17	eggNOG-mapper	411470.RUMGNA_02319	COG NOG11304 non supervised orthologous group	NA
UHGV-0162819_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0162819_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0162819_18	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0162819_18	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0162819_18	Structural annotation	TIGR01725	NA	NA
UHGV-0162819_19	eggNOG-mapper	1123315.AUIP01000001_gene1429	NA	NA
UHGV-0162819_19	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0162819_20	PHROG	phrog_19734	NA	unknown function
UHGV-0162819_20	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0162819_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0162819_21	PHROG	phrog_749	NA	unknown function
UHGV-0162819_21	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0162819_21	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0162819_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0162819_22	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0162819_22	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0162819_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0162819_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0162819_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162819_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162819_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0162819_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0162819_23	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0162819_23	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0162819_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0162819_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0162819_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0162819_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0162819_24	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0162819_24	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0162819_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0162819_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0162819_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0162819_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0162819_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0162819_25	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0162819_25	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0162819_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0162819_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0162819_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0162819_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0162819_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0162819_26	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0162819_26	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0162819_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0162819_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162819_27	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0162819_27	eggNOG-mapper	1123315.AUIP01000014_gene1945	HNH endonuclease	NA
UHGV-0162819_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0162819_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0162819_28	Structural annotation	TIGR01636	NA	NA
UHGV-0162819_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0162819_29	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0162819_29	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0162819_31	PHROG	phrog_824	NA	unknown function
UHGV-0162819_31	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0162819_31	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0162819_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0162819_31	Structural annotation	PF08774	NA	NA
UHGV-0162819_32	PHROG	phrog_24518	NA	unknown function
UHGV-0162819_32	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0162819_34	PHROG	phrog_15609	NA	unknown function
UHGV-0162819_34	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0162819_34	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0162819_34	Pfam	PF11300	NA	DUF3102
UHGV-0162819_34	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0162819_35	PHROG	phrog_8470	NA	unknown function
UHGV-0162819_35	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0162819_35	eggNOG-mapper	457412.RSAG_01172	PcfJ-like protein	NA
UHGV-0162819_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0162819_35	Structural annotation	PF14284	NA	NA
UHGV-0162819_36	PHROG	phrog_36399	NA	unknown function
UHGV-0162819_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0162819_39	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0162819_40	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0162819_40	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0162819_40	Pfam	PF05339	NA	DUF739
UHGV-0162819_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0162819_40	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0162819_41	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0162819_41	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-0162819_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0162819_41	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0162819_42	PHROG	phrog_1914	NA	unknown function
UHGV-0162819_42	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0162819_42	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0162819_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0162819_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0162819_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0162819_43	PHROG	phrog_1847	NA	unknown function
UHGV-0162819_43	UniRef90	UniRef90_U2Q2K4	T5orf172 domain-containing protein	NA
UHGV-0162819_43	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0162819_43	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0162819_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0162819_43	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0162819_44	KOfam	K14059	int; integrase	NA
UHGV-0162819_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0162819_44	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0162819_44	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0162819_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0162819_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0162819_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0162819_44	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0162819_45	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0162819_45	PHROG	phrog_95	integrase	integration and excision
UHGV-0162819_45	UniRef90	UniRef90_R6NV47	Recombinase family protein	NA
UHGV-0162819_45	eggNOG-mapper	935948.KE386495_gene1360	Resolvase, N terminal domain	NA
UHGV-0162819_45	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0162819_45	Pfam	PF07508	Recombinase	Recombinase
UHGV-0162819_45	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0162819_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0162819_45	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0162819_48	UniRef90	UniRef90_A0A374US54	HTH_56 domain-containing protein	NA
UHGV-0162819_48	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0162819_49	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0162819_49	UniRef90	UniRef90_UPI00189B49B7	NA	NA
UHGV-0162819_49	eggNOG-mapper	176279.SERP2483	NA	NA
UHGV-0162819_49	Pfam	PF06048	NA	DUF927
UHGV-0162819_49	COG	COG5519	NA	NA