UHGV-0163021

Genome information

Genome length 41,719 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163021
vOTU ID	vOTU-010732
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500796
BioSample	SAMN06110083
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.12
Jumbo phage	No

Genome content
Genome length	41,719 bps
GC content	58.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.47%
Average CDS length	724.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163021_1	KOfam	K14059	int; integrase	NA
UHGV-0163021_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0163021_1	UniRef90	UniRef90_A0A0H3ECF6	Integrase/recombinase	NA
UHGV-0163021_1	eggNOG-mapper	566552.BIFCAT_00908	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0163021_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0163021_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163021_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163021_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0163021_2	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0163021_3	UniRef90	UniRef90_A0A8B2ZGU3	HEPN domain-containing protein	NA
UHGV-0163021_3	eggNOG-mapper	479437.Elen_1513	HEPN domain	NA
UHGV-0163021_3	Pfam	PF05168	HEPN domain	HEPN
UHGV-0163021_3	COG	COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	NA
UHGV-0163021_4	PHROG	phrog_11491	NA	unknown function
UHGV-0163021_4	UniRef90	UniRef90_UPI0009BD580B	NA	NA
UHGV-0163021_4	eggNOG-mapper	1435051.BMOU_0267	NA	NA
UHGV-0163021_5	PHROG	phrog_87	metallo-protease	other
UHGV-0163021_5	UniRef90	UniRef90_UPI001E4081C5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0163021_5	eggNOG-mapper	398513.BBNG_00813	NA	NA
UHGV-0163021_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0163021_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0163021_6	KOfam	K06921	NA	NA
UHGV-0163021_6	PHROG	phrog_6841	NA	unknown function
UHGV-0163021_6	UniRef90	UniRef90_UPI0018DBFFC6	ATP-binding protein	NA
UHGV-0163021_6	eggNOG-mapper	762211.BSTEL_0666	AAA ATPase domain	NA
UHGV-0163021_6	Pfam	PF13191	AAA ATPase domain	AAA_16
UHGV-0163021_6	COG	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	NA
UHGV-0163021_6	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-0163021_7	UniRef90	UniRef90_UPI000D5643C3	XRE family transcriptional regulator	NA
UHGV-0163021_7	eggNOG-mapper	702459.BBPR_0880	NA	NA
UHGV-0163021_7	Structural annotation	PF08667, MF_00535, NF041677, COG1476	NA	NA
UHGV-0163021_8	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0163021_8	UniRef90	UniRef90_A0A0G9MAT5	HTH cro/C1-type domain-containing protein	NA
UHGV-0163021_8	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0163021_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163021_8	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0163021_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0163021_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0163021_9	UniRef90	UniRef90_UPI001C22BDEF	phage antirepressor KilAC domain-containing protein	NA
UHGV-0163021_9	eggNOG-mapper	78345.BMERY_0904	BRO family, N-terminal domain	NA
UHGV-0163021_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0163021_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0163021_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0163021_9	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0163021_11	eggNOG-mapper	566552.BIFCAT_00892	NA	NA
UHGV-0163021_12	UniRef90	UniRef90_A0A1X2ZMI0	DNA-binding protein	NA
UHGV-0163021_12	eggNOG-mapper	566552.BIFCAT_00891	NA	NA
UHGV-0163021_15	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0163021_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0163021_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0163021_17	UniRef90	UniRef90_UPI0018DB7EF3	single-stranded DNA-binding protein	NA
UHGV-0163021_17	eggNOG-mapper	398513.BBNG_00826	Single-strand binding protein family	NA
UHGV-0163021_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0163021_17	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0163021_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0163021_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0163021_17	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0163021_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0163021_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0163021_18	UniRef90	UniRef90_A0A1X2ZNC1	Chromosome partitioning protein ParB	NA
UHGV-0163021_18	eggNOG-mapper	398513.BBNG_00827	ParB-like nuclease domain	NA
UHGV-0163021_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0163021_18	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0163021_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0163021_18	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0163021_19	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163021_19	UniRef90	UniRef90_A0A1X2ZMN2	Phage replication protein	NA
UHGV-0163021_19	eggNOG-mapper	398513.BBNG_00828	Transcriptional regulator	NA
UHGV-0163021_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0163021_19	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0163021_19	Structural annotation	PF01978, TIGR01610, COG5529	NA	NA
UHGV-0163021_20	eggNOG-mapper	566552.BIFCAT_00886	NA	NA
UHGV-0163021_21	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163021_21	UniRef90	UniRef90_A0A0B5BGU1	Restriction endonuclease	NA
UHGV-0163021_21	eggNOG-mapper	566552.BIFCAT_00885	HNH endonuclease	NA
UHGV-0163021_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163021_22	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0163021_22	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0163021_22	UniRef90	UniRef90_A0A1V8QC54	Oligoribonuclease	NA
UHGV-0163021_22	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0163021_22	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0163021_22	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0163021_23	UniRef90	UniRef90_UPI001E3BBD80	Lar family restriction alleviation protein	NA
UHGV-0163021_23	Structural annotation	TIGR03655	NA	NA
UHGV-0163021_24	PHROG	phrog_3641	NA	unknown function
UHGV-0163021_24	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0163021_26	UniRef90	UniRef90_A0A3D1TL16	Antitoxin	NA
UHGV-0163021_26	eggNOG-mapper	566552.BIFCAT_00880	NA	NA
UHGV-0163021_26	Structural annotation	PF04218	NA	NA
UHGV-0163021_27	PHROG	phrog_908	NA	unknown function
UHGV-0163021_27	UniRef90	UniRef90_A0A412KBG6	DNA-binding protein	NA
UHGV-0163021_27	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0163021_27	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0163021_27	Structural annotation	COG0789	NA	NA
UHGV-0163021_29	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0163021_29	UniRef90	UniRef90_A0A1X2ZMQ9	G28 phagic protein	NA
UHGV-0163021_29	eggNOG-mapper	1680.BADO_1215	Transcriptional regulator	NA
UHGV-0163021_29	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0163021_29	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0163021_30	COG	COG1268	Biotin transporter BioY	NA
UHGV-0163021_32	eggNOG-mapper	158787.BSCA_1012	NA	NA
UHGV-0163021_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0163021_33	UniRef90	UniRef90_A0A1X3A9X3	Terminase	NA
UHGV-0163021_33	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0163021_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0163021_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0163021_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0163021_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0163021_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163021_34	UniRef90	UniRef90_W4NAK9	Terminase	NA
UHGV-0163021_34	eggNOG-mapper	1435051.BMOU_0780	Phage Terminase	NA
UHGV-0163021_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0163021_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0163021_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163021_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0163021_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0163021_36	UniRef90	UniRef90_A0A1X3AA46	PE-PGRS family protein	NA
UHGV-0163021_36	eggNOG-mapper	1435051.BMOU_0778	Phage portal protein	NA
UHGV-0163021_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0163021_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0163021_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0163021_37	KOfam	K06904	NA	NA
UHGV-0163021_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0163021_37	UniRef90	UniRef90_A0A6A2RR94	HK97 family phage prohead protease	NA
UHGV-0163021_37	eggNOG-mapper	1435051.BMOU_0777	Phage capsid family	NA
UHGV-0163021_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0163021_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0163021_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0163021_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0163021_38	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0163021_38	UniRef90	UniRef90_A0A1X2ZNE2	Mobile element protein	NA
UHGV-0163021_38	eggNOG-mapper	1435051.BMOU_0776	NA	NA
UHGV-0163021_38	Structural annotation	TIGR02215	NA	NA
UHGV-0163021_39	eggNOG-mapper	1435051.BMOU_0775	NA	NA
UHGV-0163021_40	eggNOG-mapper	1435051.BMOU_0774	NA	NA
UHGV-0163021_40	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0163021_41	eggNOG-mapper	1435051.BMOU_0773	NA	NA
UHGV-0163021_41	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0163021_42	PHROG	phrog_476	major tail protein	tail
UHGV-0163021_42	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0163021_42	eggNOG-mapper	1435051.BMOU_0772	NA	NA
UHGV-0163021_42	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0163021_43	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0163021_43	eggNOG-mapper	566552.BIFCAT_00864	NA	NA
UHGV-0163021_44	eggNOG-mapper	1435051.BMOU_0770	NA	NA
UHGV-0163021_45	PHROG	phrog_971	endolysin	lysis
UHGV-0163021_45	UniRef90	UniRef90_A0A1X3A9R3	Cell surface protein	NA
UHGV-0163021_45	eggNOG-mapper	566552.BIFCAT_00862	Transglycosylase SLT domain	NA
UHGV-0163021_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0163021_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0163021_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0163021_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0163021_45	Structural annotation	PF20155, PF09486, TIGR02971, COG3953, COG3941, COG1579	NA	NA
UHGV-0163021_46	PHROG	phrog_5577	minor tail protein	tail
UHGV-0163021_46	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0163021_46	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0163021_46	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0163021_47	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0163021_47	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-0163021_47	eggNOG-mapper	566552.BIFCAT_00860	NA	NA
UHGV-0163021_47	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0163021_48	PHROG	phrog_1885	minor tail protein	tail
UHGV-0163021_48	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0163021_48	eggNOG-mapper	566552.BIFCAT_00859	NA	NA
UHGV-0163021_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0163021_49	PHROG	phrog_21973	tail protein	tail
UHGV-0163021_49	UniRef90	UniRef90_A0A1X2Z8V6	Autotransporter adhesin	NA
UHGV-0163021_49	eggNOG-mapper	566552.BIFCAT_00858	nuclear chromosome segregation	NA
UHGV-0163021_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0163021_50	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0163021_51	PHROG	phrog_1397	NA	unknown function
UHGV-0163021_51	UniRef90	UniRef90_A0A1X2ZMT4	PRTRC system protein E	NA
UHGV-0163021_51	eggNOG-mapper	78345.BMERY_0865	NA	NA
UHGV-0163021_52	PHROG	phrog_263	holin	lysis
UHGV-0163021_52	UniRef90	UniRef90_A0A1X3AA97	Holin, SPP1 family	NA
UHGV-0163021_52	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0163021_52	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0163021_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163021_53	PHROG	phrog_19265	NA	unknown function
UHGV-0163021_53	UniRef90	UniRef90_B6XUG6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163021_53	eggNOG-mapper	566552.BIFCAT_00851	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163021_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163021_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0163021_53	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA