UHGV-0163035

Genome information

Genome length 32,831 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163035
vOTU ID	vOTU-001427
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_536295
BioSample	SAMN06164638
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.21
Jumbo phage	No

Genome content
Genome length	32,831 bps
GC content	52.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.45%
Average CDS length	641.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163035_1	PHROG	phrog_21498	NA	unknown function
UHGV-0163035_1	UniRef90	UniRef90_UPI001E4A965D	chromosome partitioning protein ParB	NA
UHGV-0163035_1	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0163035_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0163035_2	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0163035_2	eggNOG-mapper	1111134.HMPREF1253_1193	NA	NA
UHGV-0163035_2	Structural annotation	PF02996	NA	NA
UHGV-0163035_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0163035_5	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163035_5	UniRef90	UniRef90_A0A3D0M1J0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0163035_5	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0163035_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0163035_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0163035_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0163035_6	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163035_6	UniRef90	UniRef90_UPI00067E73A4	NA	NA
UHGV-0163035_6	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0163035_6	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0163035_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0163035_6	Structural annotation	PF14297	NA	NA
UHGV-0163035_7	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0163035_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0163035_7	UniRef90	UniRef90_UPI00190EB189	MBL fold metallo-hydrolase	NA
UHGV-0163035_7	eggNOG-mapper	1444309.JAQG01000013_gene1930	Metallo-beta-lactamase superfamily	NA
UHGV-0163035_7	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0163035_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0163035_7	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0163035_8	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163035_8	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163035_8	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0163035_8	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-0163035_8	Pfam	PF03837	RecT family	RecT
UHGV-0163035_8	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163035_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0163035_8	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0163035_10	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0163035_10	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163035_10	UniRef90	UniRef90_A0A7G9WF72	AAA family ATPase	NA
UHGV-0163035_10	eggNOG-mapper	1444309.JAQG01000013_gene1928	nuclear chromosome segregation	NA
UHGV-0163035_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0163035_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0163035_10	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0163035_11	PHROG	phrog_4433	NA	unknown function
UHGV-0163035_11	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0163035_11	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0163035_11	Structural annotation	NF007410	NA	NA
UHGV-0163035_13	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0163035_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163035_16	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0163035_16	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0163035_16	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0163035_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163035_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163035_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0163035_18	PHROG	phrog_17572	NA	unknown function
UHGV-0163035_18	UniRef90	UniRef90_A0A0H4LIJ8	Prophage ps2 protein 03	NA
UHGV-0163035_18	eggNOG-mapper	1499683.CCFF01000017_gene3026	NA	NA
UHGV-0163035_18	AcrCatalog	cluster_25152	NA	NA
UHGV-0163035_18	Structural annotation	PF13783, MF_01122	NA	NA
UHGV-0163035_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163035_19	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0163035_20	KOfam	K14059	int; integrase	NA
UHGV-0163035_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0163035_20	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0163035_20	eggNOG-mapper	861454.HMPREF9099_00328	Phage integrase family	NA
UHGV-0163035_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163035_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163035_20	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0163035_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163035_25	PHROG	phrog_3088	amidase	lysis
UHGV-0163035_25	UniRef90	UniRef90_A0A3D3Y0W1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0163035_25	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163035_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163035_25	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0163035_25	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0163035_26	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0163035_26	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0163035_26	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0163035_26	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0163035_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0163035_26	Structural annotation	PF10651	NA	NA
UHGV-0163035_27	PHROG	phrog_443	holin	lysis
UHGV-0163035_27	UniRef90	UniRef90_UPI001C3BFF52	Holin	NA
UHGV-0163035_27	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0163035_27	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0163035_27	Structural annotation	PF16945	NA	NA
UHGV-0163035_28	PHROG	phrog_1863	NA	unknown function
UHGV-0163035_28	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0163035_29	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0163035_29	Structural annotation	PF10651, PF19789, COG2372	NA	NA
UHGV-0163035_30	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0163035_30	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-0163035_30	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0163035_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0163035_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0163035_30	COG	COG4926	Phage-related protein	NA
UHGV-0163035_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0163035_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0163035_31	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0163035_31	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0163035_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0163035_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0163035_32	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0163035_32	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0163035_32	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0163035_32	COG	COG5412	Phage-related protein	NA
UHGV-0163035_32	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0163035_33	PHROG	phrog_709	NA	unknown function
UHGV-0163035_33	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0163035_33	Structural annotation	PF11836	NA	NA
UHGV-0163035_34	PHROG	phrog_88	major tail protein	tail
UHGV-0163035_34	UniRef90	UniRef90_D1PND6	Phage major tail protein, phi13 family	NA
UHGV-0163035_34	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0163035_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0163035_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0163035_35	PHROG	phrog_78	tail terminator	connector
UHGV-0163035_35	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0163035_35	Structural annotation	PF20765	NA	NA
UHGV-0163035_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0163035_36	UniRef90	UniRef90_UPI00105617E0	HK97 gp10 family phage protein	NA
UHGV-0163035_36	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0163035_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0163035_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0163035_37	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0163035_37	UniRef90	UniRef90_UPI0013024D32	phage head closure protein	NA
UHGV-0163035_37	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0163035_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0163035_38	PHROG	phrog_2550	NA	unknown function
UHGV-0163035_38	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0163035_38	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0163035_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0163035_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0163035_39	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0163035_39	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0163035_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0163035_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0163035_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0163035_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0163035_40	KOfam	K06904	NA	NA
UHGV-0163035_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0163035_40	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0163035_40	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0163035_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0163035_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0163035_40	COG	COG3740	Phage head maturation protease	NA
UHGV-0163035_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0163035_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0163035_41	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0163035_41	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0163035_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0163035_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0163035_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0163035_41	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0163035_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163035_42	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0163035_42	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0163035_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0163035_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0163035_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163035_42	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0163035_43	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0163035_43	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0163035_43	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0163035_43	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0163035_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0163035_44	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0163035_44	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163035_44	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0163035_44	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0163035_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0163035_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163035_44	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0163035_46	PHROG	phrog_21498	NA	unknown function
UHGV-0163035_46	eggNOG-mapper	553184.ATORI0001_1182	DNA binding	NA
UHGV-0163035_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA