UHGV-0163059

Genome information

Genome length 34,217 bps

CDS count 53

Completeness 98.53% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163059
vOTU ID	vOTU-079415
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_511046
BioSample	SAMN06164971
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.9
Jumbo phage	No

Genome content
Genome length	34,217 bps
GC content	45.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.18%
Average CDS length	602.21 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163059_1	PHROG	phrog_7566	NA	unknown function
UHGV-0163059_1	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0163059_2	PHROG	phrog_24368	NA	unknown function
UHGV-0163059_2	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0163059_3	PHROG	phrog_15077	NA	unknown function
UHGV-0163059_3	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-0163059_3	eggNOG-mapper	1235793.C809_01908	NA	NA
UHGV-0163059_3	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0163059_4	PHROG	phrog_8470	NA	unknown function
UHGV-0163059_4	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0163059_4	eggNOG-mapper	610130.Closa_1108	PcfJ-like protein	NA
UHGV-0163059_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0163059_4	Structural annotation	PF14284	NA	NA
UHGV-0163059_5	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0163059_6	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0163059_6	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0163059_6	UniRef90	UniRef90_R6CVM1	RNase H type-1 domain-containing protein	NA
UHGV-0163059_6	eggNOG-mapper	1235793.C809_01903	RNase H	NA
UHGV-0163059_6	Pfam	PF00075	RNase H	RNase_H
UHGV-0163059_6	COG	COG0328	Ribonuclease HI	NA
UHGV-0163059_6	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0163059_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163059_7	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0163059_7	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0163059_7	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0163059_10	Structural annotation	PF09035	NA	NA
UHGV-0163059_11	PHROG	phrog_750	NA	unknown function
UHGV-0163059_11	eggNOG-mapper	46256.BBIK01000013_gene1720	NA	NA
UHGV-0163059_12	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0163059_12	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0163059_12	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0163059_12	Pfam	PF11195	NA	DUF2829
UHGV-0163059_12	Structural annotation	PF11195	NA	NA
UHGV-0163059_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163059_15	PHROG	phrog_2104	NA	unknown function
UHGV-0163059_15	UniRef90	UniRef90_R6BYZ9	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0163059_15	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163059_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163059_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163059_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163059_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0163059_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0163059_16	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-0163059_16	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163059_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163059_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0163059_16	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0163059_16	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0163059_17	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0163059_17	PHROG	phrog_15286	NA	unknown function
UHGV-0163059_17	UniRef90	UniRef90_A0A3A6HZL1	Bro-N domain-containing protein	NA
UHGV-0163059_17	eggNOG-mapper	1232452.BAIB02000007_gene1654	NA	NA
UHGV-0163059_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0163059_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0163059_17	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0163059_18	KOfam	K14059	int; integrase	NA
UHGV-0163059_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0163059_18	UniRef90	UniRef90_R6C1N7	Site-specific recombinase XerD	NA
UHGV-0163059_18	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0163059_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0163059_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163059_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163059_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0163059_19	PHROG	phrog_36767	NA	unknown function
UHGV-0163059_19	UniRef90	UniRef90_UPI001C3CBD48	NA	NA
UHGV-0163059_19	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0163059_20	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0163059_21	Pfam	PF11950	NA	DUF3467
UHGV-0163059_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163059_22	PHROG	phrog_7698	endolysin	lysis
UHGV-0163059_22	UniRef90	UniRef90_A0A1C5UFN2	Exo-glucosaminidase lytG	NA
UHGV-0163059_22	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163059_22	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0163059_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163059_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0163059_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163059_22	Structural annotation	PF01832, PF01510, PF08230, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-0163059_23	PHROG	phrog_199	holin	lysis
UHGV-0163059_23	UniRef90	UniRef90_UPI001EE92C08	phage holin family protein	NA
UHGV-0163059_23	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0163059_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0163059_23	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0163059_23	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0163059_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0163059_26	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-0163059_27	PHROG	phrog_5811	NA	unknown function
UHGV-0163059_27	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0163059_28	PHROG	phrog_7064	tail protein	tail
UHGV-0163059_28	eggNOG-mapper	1235793.C809_04316	NA	NA
UHGV-0163059_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0163059_29	PHROG	phrog_20385	minor tail protein	tail
UHGV-0163059_29	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0163059_29	eggNOG-mapper	397287.C807_03967	NA	NA
UHGV-0163059_29	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0163059_29	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0163059_30	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0163059_30	UniRef90	UniRef90_R6CVJ2	Phage tail tape measure protein TP901 family core region	NA
UHGV-0163059_30	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0163059_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0163059_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0163059_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0163059_30	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0163059_31	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0163059_31	Structural annotation	PF11836	NA	NA
UHGV-0163059_32	PHROG	phrog_88	major tail protein	tail
UHGV-0163059_32	UniRef90	UniRef90_R6C1J4	Phage major tail protein phi13 family	NA
UHGV-0163059_32	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0163059_32	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0163059_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0163059_32	COG	COG5492	NA	NA
UHGV-0163059_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0163059_33	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0163059_33	COG	COG5492	NA	NA
UHGV-0163059_33	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0163059_34	UniRef90	UniRef90_R6CVJ7	HK97 gp10 family phage protein	NA
UHGV-0163059_34	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-0163059_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0163059_34	Structural annotation	TIGR01725	NA	NA
UHGV-0163059_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0163059_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0163059_36	PHROG	phrog_2550	NA	unknown function
UHGV-0163059_36	eggNOG-mapper	642492.Clole_0745	NA	NA
UHGV-0163059_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0163059_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0163059_37	UniRef90	UniRef90_A0A2G3Q1E7	Phage major capsid protein	NA
UHGV-0163059_37	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0163059_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0163059_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0163059_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0163059_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0163059_38	KOfam	K06904	NA	NA
UHGV-0163059_38	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0163059_38	UniRef90	UniRef90_UPI0004E0D846	HK97 family phage prohead protease	NA
UHGV-0163059_38	eggNOG-mapper	491915.Aflv_0663	Caudovirus prohead serine protease	NA
UHGV-0163059_38	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0163059_38	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0163059_38	COG	COG3740	Phage head maturation protease	NA
UHGV-0163059_38	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0163059_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0163059_39	UniRef90	UniRef90_F2JNX7	Phage portal protein, HK97 family	NA
UHGV-0163059_39	eggNOG-mapper	642492.Clole_0742	Phage portal protein, HK97 family	NA
UHGV-0163059_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0163059_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0163059_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0163059_39	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0163059_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163059_40	UniRef90	UniRef90_A0A1X2FVF5	Terminase	NA
UHGV-0163059_40	eggNOG-mapper	642492.Clole_0741	Phage Terminase	NA
UHGV-0163059_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0163059_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0163059_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163059_40	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0163059_41	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0163059_41	UniRef90	UniRef90_A0A1F8UPJ2	Terminase	NA
UHGV-0163059_41	eggNOG-mapper	358681.BBR47_29130	Phage terminase, small subunit	NA
UHGV-0163059_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0163059_41	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0163059_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0163059_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0163059_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163059_42	UniRef90	UniRef90_UPI0011782A10	HNH endonuclease	NA
UHGV-0163059_42	eggNOG-mapper	642492.Clole_0739	HNH nucleases	NA
UHGV-0163059_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0163059_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163059_42	Structural annotation	TIGR02646	NA	NA
UHGV-0163059_43	UniRef90	UniRef90_R6CCZ5	Methyl-accepting chemotaxis protein	NA
UHGV-0163059_43	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0163059_43	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0163059_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0163059_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163059_45	UniRef90	UniRef90_A0A1C5W216	HTH-type transcriptional regulator immR	NA
UHGV-0163059_45	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163059_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0163059_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163059_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0163059_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163059_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0163059_46	UniRef90	UniRef90_R6C1K8	HTH cro/C1-type domain-containing protein	NA
UHGV-0163059_46	eggNOG-mapper	1048834.TC41_1894	sequence-specific DNA binding	NA
UHGV-0163059_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163059_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163059_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0163059_47	PHROG	phrog_874	NA	unknown function
UHGV-0163059_47	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0163059_47	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0163059_47	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0163059_48	PHROG	phrog_20593	NA	unknown function
UHGV-0163059_49	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0163059_49	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0163059_49	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0163059_49	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0163059_49	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0163059_50	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-0163059_50	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0163059_52	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA