UHGV-0163268

Genome information

Genome length 26,929 bps

CDS count 42

Completeness 64.58% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163268
vOTU ID	vOTU-028113
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500880
BioSample	SAMN06110109
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.81
Jumbo phage	No

Genome content
Genome length	26,929 bps
GC content	45.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.54%
Average CDS length	591.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163268_1	KOfam	K03215	rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]	NA
UHGV-0163268_1	PHROG	phrog_11787	DNA methyltransferase	other
UHGV-0163268_1	UniRef90	UniRef90_A0A416TGV2	23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD	NA
UHGV-0163268_1	eggNOG-mapper	742723.HMPREF9477_01763	tRNA (Uracil-5-)-methyltransferase	NA
UHGV-0163268_1	Pfam	PF01938	TRAM domain	TRAM
UHGV-0163268_1	Pfam	PF05958	tRNA (Uracil-5-)-methyltransferase	tRNA_U5-meth_tr
UHGV-0163268_1	NCBIFam	TIGR00479.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA
UHGV-0163268_1	COG	COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	NA
UHGV-0163268_1	Structural annotation	PF05958, PF01938, MF_01010, TIGR00479, COG2265	NA	NA
UHGV-0163268_2	KOfam	K14059	int; integrase	NA
UHGV-0163268_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0163268_2	UniRef90	UniRef90_A0A174AZK7	Site-specific tyrosine recombinase XerC	NA
UHGV-0163268_2	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0163268_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0163268_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0163268_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163268_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163268_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0163268_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0163268_3	UniRef90	UniRef90_UPI001F193BFE	Ltp family lipoprotein	NA
UHGV-0163268_3	eggNOG-mapper	742818.HMPREF9451_01281	Host cell surface-exposed lipoprotein	NA
UHGV-0163268_3	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0163268_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0163268_3	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0163268_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0163268_4	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163268_4	UniRef90	UniRef90_A0A417WY54	HNH endonuclease	NA
UHGV-0163268_4	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0163268_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0163268_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163268_4	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0163268_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0163268_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163268_6	UniRef90	UniRef90_A0A174S783	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0163268_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0163268_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163268_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163268_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0163268_7	eggNOG-mapper	397290.C810_05154	NA	NA
UHGV-0163268_9	eggNOG-mapper	1123399.AQVE01000012_gene2935	NA	NA
UHGV-0163268_9	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0163268_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0163268_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0163268_10	UniRef90	UniRef90_A0A417WXZ3	Oxidoreductase	NA
UHGV-0163268_10	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0163268_10	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0163268_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0163268_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0163268_10	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0163268_11	PHROG	phrog_6058	NA	unknown function
UHGV-0163268_11	UniRef90	UniRef90_UPI001C00DBC2	helix-turn-helix domain-containing protein	NA
UHGV-0163268_11	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-0163268_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163268_11	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0163268_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163268_13	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0163268_13	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0163268_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0163268_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0163268_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0163268_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0163268_14	PHROG	phrog_674	NA	unknown function
UHGV-0163268_14	UniRef90	UniRef90_UPI001C1259C1	NA	NA
UHGV-0163268_14	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0163268_14	Pfam	PF07083	NA	DUF1351
UHGV-0163268_14	Structural annotation	PF07083	NA	NA
UHGV-0163268_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163268_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163268_15	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0163268_15	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0163268_15	Pfam	PF03837	RecT family	RecT
UHGV-0163268_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163268_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0163268_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0163268_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0163268_16	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0163268_17	PHROG	phrog_1029	NA	unknown function
UHGV-0163268_17	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0163268_17	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0163268_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0163268_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0163268_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0163268_18	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-0163268_18	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0163268_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0163268_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0163268_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0163268_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0163268_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0163268_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163268_19	eggNOG-mapper	1304866.K413DRAFT_1199	NA	NA
UHGV-0163268_19	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0163268_20	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0163268_20	UniRef90	UniRef90_A0A2N5NVH3	Phage_rep_org_N domain-containing protein	NA
UHGV-0163268_20	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0163268_20	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0163268_20	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0163268_20	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0163268_21	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0163268_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0163268_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0163268_25	UniRef90	UniRef90_UPI001C01F8F2	DNA cytosine methyltransferase	NA
UHGV-0163268_25	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0163268_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0163268_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0163268_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0163268_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0163268_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0163268_26	UniRef90	UniRef90_A0A174SAH0	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0163268_26	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0163268_26	Structural annotation	PF02996	NA	NA
UHGV-0163268_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0163268_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0163268_27	UniRef90	UniRef90_A0A417WXA6	Terminase small subunit	NA
UHGV-0163268_27	eggNOG-mapper	641112.ACOK01000073_gene2887	Terminase small subunit	NA
UHGV-0163268_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0163268_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0163268_27	Structural annotation	PF03592	NA	NA
UHGV-0163268_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163268_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0163268_28	UniRef90	UniRef90_A0A174S812	Phage terminase, large subunit, PBSX family	NA
UHGV-0163268_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0163268_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0163268_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0163268_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163268_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163268_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0163268_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0163268_29	UniRef90	UniRef90_A0A373P643	Phage portal protein	NA
UHGV-0163268_29	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0163268_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0163268_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0163268_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0163268_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0163268_30	UniRef90	UniRef90_A0A396P1E8	Phage_Mu_F domain-containing protein	NA
UHGV-0163268_30	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0163268_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0163268_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0163268_30	COG	COG2369	NA	NA
UHGV-0163268_30	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0163268_32	PHROG	phrog_3675	NA	unknown function
UHGV-0163268_32	UniRef90	UniRef90_A0A174SAX8	YjcQ protein	NA
UHGV-0163268_32	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0163268_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0163268_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0163268_33	PHROG	phrog_3675	NA	unknown function
UHGV-0163268_33	UniRef90	UniRef90_A0A173ZDX5	YjcQ protein	NA
UHGV-0163268_33	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-0163268_33	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0163268_33	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0163268_34	KOfam	K07584	NA	NA
UHGV-0163268_34	PHROG	phrog_4478	peptidase	other
UHGV-0163268_34	UniRef90	UniRef90_A0A373P5W7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0163268_34	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0163268_34	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0163268_34	COG	COG2868	NA	NA
UHGV-0163268_34	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0163268_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0163268_35	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0163268_35	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0163268_35	Pfam	PF14265	NA	DUF4355
UHGV-0163268_35	Structural annotation	PF14265	NA	NA
UHGV-0163268_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0163268_36	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0163268_36	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0163268_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0163268_37	PHROG	phrog_2724	NA	unknown function
UHGV-0163268_37	UniRef90	UniRef90_A0A1C5LBF0	Rho termination factor, N-terminal domain	NA
UHGV-0163268_37	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0163268_37	COG	COG0292	Ribosomal protein L20	NA
UHGV-0163268_37	Structural annotation	PF07498	NA	NA
UHGV-0163268_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0163268_38	UniRef90	UniRef90_A0A1C5LAU6	Phage gp6-like head-tail connector protein	NA
UHGV-0163268_38	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0163268_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0163268_38	Structural annotation	PF05135	NA	NA
UHGV-0163268_39	PHROG	phrog_2168	NA	unknown function
UHGV-0163268_39	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0163268_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0163268_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0163268_40	UniRef90	UniRef90_A0A1C5LAB9	Phage protein, HK97 gp10 family	NA
UHGV-0163268_40	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0163268_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0163268_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0163268_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0163268_41	PHROG	phrog_78	tail terminator	connector
UHGV-0163268_41	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0163268_41	Structural annotation	PF05657	NA	NA
UHGV-0163268_42	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-0163268_42	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0163268_42	Structural annotation	PF16463	NA	NA