UHGV-0163396

Genome information

Genome length 42,474 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163396
vOTU ID	vOTU-010737
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_551992
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.56
Jumbo phage	No

Genome content
Genome length	42,474 bps
GC content	58.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.77%
Average CDS length	584.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163396_1	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0163396_1	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-0163396_2	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0163396_2	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-0163396_3	PHROG	phrog_87	metallo-protease	other
UHGV-0163396_3	UniRef90	UniRef90_UPI001CF991EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0163396_3	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0163396_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0163396_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0163396_4	UniRef90	UniRef90_A0A3E5HJH1	XRE family transcriptional regulator	NA
UHGV-0163396_4	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0163396_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0163396_5	UniRef90	UniRef90_UPI001CFDF36A	anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0163396_6	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0163396_6	UniRef90	UniRef90_A0A174BZI9	The helix-turn-helix motif	NA
UHGV-0163396_6	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0163396_6	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0163396_8	Structural annotation	PF19824, NF009256	NA	NA
UHGV-0163396_9	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0163396_9	Structural annotation	PF12989	NA	NA
UHGV-0163396_10	eggNOG-mapper	398513.BBNG_00824	NA	NA
UHGV-0163396_11	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0163396_11	PHROG	phrog_923	NA	unknown function
UHGV-0163396_11	UniRef90	UniRef90_UPI001CFB6FF2	NA	NA
UHGV-0163396_11	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0163396_11	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0163396_11	Pfam	PF19062	NA	DUF5758
UHGV-0163396_11	COG	COG1357	NA	NA
UHGV-0163396_11	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0163396_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0163396_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0163396_12	UniRef90	UniRef90_A0A412K8X8	Phage antirepressor Ant	NA
UHGV-0163396_12	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0163396_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0163396_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0163396_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0163396_12	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0163396_13	UniRef90	UniRef90_D4BRT8	HTH_17 domain-containing protein	NA
UHGV-0163396_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0163396_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0163396_14	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0163396_15	UniRef90	UniRef90_A0A072MRK2	Negative regulator of class I heat shock protein	NA
UHGV-0163396_15	Structural annotation	PF01047	NA	NA
UHGV-0163396_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163396_17	UniRef90	UniRef90_A0A072N4V5	Endonuclease	NA
UHGV-0163396_17	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0163396_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0163396_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0163396_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0163396_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0163396_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163396_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163396_18	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0163396_18	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0163396_18	Pfam	PF03837	RecT family	RecT
UHGV-0163396_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163396_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0163396_18	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0163396_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0163396_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0163396_19	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0163396_19	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0163396_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0163396_19	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0163396_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0163396_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0163396_19	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0163396_20	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163396_20	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0163396_20	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0163396_20	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0163396_21	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163396_21	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0163396_21	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0163396_22	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0163396_22	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0163396_24	PHROG	phrog_3641	NA	unknown function
UHGV-0163396_24	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0163396_26	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0163396_26	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0163396_27	PHROG	phrog_908	NA	unknown function
UHGV-0163396_27	UniRef90	UniRef90_UPI001D00FC40	PhnA protein	NA
UHGV-0163396_27	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0163396_27	Structural annotation	COG0789	NA	NA
UHGV-0163396_28	UniRef90	UniRef90_A0A6B8LMD9	Hypoyhetical protein	NA
UHGV-0163396_29	PHROG	phrog_226	minor tail protein	tail
UHGV-0163396_29	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0163396_30	PHROG	phrog_8680	NA	unknown function
UHGV-0163396_30	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-0163396_30	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0163396_30	Pfam	PF14386	NA	DUF4417
UHGV-0163396_32	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0163396_32	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0163396_32	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0163396_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163396_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0163396_33	PHROG	phrog_104	portal protein	head and packaging
UHGV-0163396_33	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0163396_33	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0163396_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0163396_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0163396_34	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0163396_34	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0163396_34	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0163396_35	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0163396_35	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0163396_35	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0163396_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0163396_36	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0163396_36	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0163396_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0163396_37	PHROG	phrog_15682	NA	unknown function
UHGV-0163396_38	UniRef90	UniRef90_A0A072MRM0	Head protein	NA
UHGV-0163396_39	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0163396_39	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0163396_39	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0163396_39	Pfam	PF09355	NA	Phage_Gp19
UHGV-0163396_39	Structural annotation	PF09355	NA	NA
UHGV-0163396_40	PHROG	phrog_13779	NA	unknown function
UHGV-0163396_40	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0163396_40	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0163396_40	Pfam	PF19586	NA	DUF6093
UHGV-0163396_40	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0163396_41	PHROG	phrog_19109	NA	unknown function
UHGV-0163396_41	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0163396_41	Structural annotation	TIGR01725	NA	NA
UHGV-0163396_42	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0163396_42	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0163396_42	Structural annotation	PF06141	NA	NA
UHGV-0163396_43	PHROG	phrog_2491	major tail protein	tail
UHGV-0163396_43	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0163396_43	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0163396_43	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0163396_44	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0163396_44	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0163396_44	Structural annotation	PF08890	NA	NA
UHGV-0163396_45	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0163396_45	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-0163396_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0163396_46	UniRef90	UniRef90_A0A6B8LK75	Phage tail protein	NA
UHGV-0163396_46	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0163396_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0163396_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0163396_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0163396_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0163396_47	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0163396_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0163396_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0163396_48	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0163396_48	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0163396_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0163396_50	PHROG	phrog_9994	NA	unknown function
UHGV-0163396_50	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0163396_50	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0163396_51	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-0163396_52	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0163396_52	Structural annotation	PF08931	NA	NA
UHGV-0163396_53	KOfam	K14059	int; integrase	NA
UHGV-0163396_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0163396_53	UniRef90	UniRef90_A0A173YYH4	Phage integrase	NA
UHGV-0163396_53	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0163396_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163396_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163396_53	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0163396_54	PHROG	phrog_28754	NA	unknown function
UHGV-0163396_54	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0163396_54	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0163396_54	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0163396_56	UniRef90	UniRef90_A0A1L5L3T6	MurA: UDP-N-acetylglucosamine (Fragment)	NA
UHGV-0163396_56	Structural annotation	PF01105, NF033147	NA	NA
UHGV-0163396_57	UniRef90	UniRef90_A0A1L5L3I3	PilM	NA
UHGV-0163396_59	UniRef90	UniRef90_A0A267WIZ8	Histidine kinase	NA
UHGV-0163396_60	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163396_60	PHROG	phrog_14048	endolysin	lysis
UHGV-0163396_60	UniRef90	UniRef90_A0A072MS57	N-acetylmuramyl-L-alanine amidase	NA
UHGV-0163396_60	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0163396_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163396_60	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0163396_60	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0163396_61	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0163396_61	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA
UHGV-0163396_62	PHROG	phrog_21498	NA	unknown function
UHGV-0163396_62	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0163396_62	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0163396_62	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0163396_64	UniRef90	UniRef90_A0A267WJ10	HTH cro/C1-type domain-containing protein	NA
UHGV-0163396_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163396_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0163396_64	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163396_65	PHROG	phrog_16123	NA	unknown function
UHGV-0163396_65	eggNOG-mapper	1435051.BMOU_0754	NA	NA
UHGV-0163396_66	KOfam	K14059	int; integrase	NA
UHGV-0163396_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0163396_66	UniRef90	UniRef90_A0A564W044	Transposase from transposon Tn916	NA
UHGV-0163396_66	eggNOG-mapper	78346.BRUM_0373	Phage integrase family	NA
UHGV-0163396_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0163396_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163396_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0163396_66	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0163396_67	UniRef90	UniRef90_A0A072MS68	Cell division protein DivIVA	NA
UHGV-0163396_67	eggNOG-mapper	547043.BIFPSEUDO_03087	Tfp pilus assembly protein FimV	NA
UHGV-0163396_67	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0163396_67	NCBIFam	TIGR03543.1	DivIVA domain repeat protein	NA
UHGV-0163396_67	COG	COG3170	Type IV pilus assembly protein FimV	NA