UHGV-0163399

Genome information

Genome length 21,189 bps

CDS count 25

Completeness 50.61% (medium-quality)

geNomad score 0.9675

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163399
vOTU ID	vOTU-022268
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_551972
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9675
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.19
Jumbo phage	No

Genome content
Genome length	21,189 bps
GC content	56.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	83.59%
Average CDS length	710.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163399_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163399_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163399_6	UniRef90	UniRef90_E2ZI88	DNA-binding helix-turn-helix protein	NA
UHGV-0163399_6	eggNOG-mapper	748224.HMPREF9436_01379	NA	NA
UHGV-0163399_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163399_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163399_7	PHROG	phrog_22683	NA	unknown function
UHGV-0163399_7	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0163399_7	eggNOG-mapper	482234.SCAZ3_03515	NA	NA
UHGV-0163399_7	AcrCatalog	cluster_3962	NA	NA
UHGV-0163399_7	Pfam	PF13783	NA	DUF4177
UHGV-0163399_7	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0163399_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0163399_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0163399_8	UniRef90	UniRef90_A0A2V2F5B5	Recombinase family protein	NA
UHGV-0163399_8	eggNOG-mapper	1121468.AUBR01000008_gene2069	Resolvase, N terminal domain	NA
UHGV-0163399_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0163399_8	Pfam	PF07508	Recombinase	Recombinase
UHGV-0163399_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0163399_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0163399_8	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0163399_9	PHROG	phrog_1129	holin	lysis
UHGV-0163399_9	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0163399_9	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0163399_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0163399_9	Structural annotation	PF06946	NA	NA
UHGV-0163399_10	PHROG	phrog_4105	NA	unknown function
UHGV-0163399_10	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0163399_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0163399_11	PHROG	phrog_291	endolysin	lysis
UHGV-0163399_11	UniRef90	UniRef90_A0A367G061	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0163399_11	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0163399_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0163399_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0163399_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0163399_11	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0163399_12	PHROG	phrog_24267	NA	unknown function
UHGV-0163399_12	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0163399_12	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0163399_12	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0163399_12	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0163399_13	PHROG	phrog_19111	NA	unknown function
UHGV-0163399_13	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-0163399_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0163399_15	PHROG	phrog_13589	NA	unknown function
UHGV-0163399_15	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0163399_16	PHROG	phrog_31538	NA	unknown function
UHGV-0163399_16	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0163399_17	Structural annotation	PF12245	NA	NA
UHGV-0163399_19	PHROG	phrog_18444	NA	unknown function
UHGV-0163399_19	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0163399_19	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0163399_20	PHROG	phrog_18190	NA	unknown function
UHGV-0163399_20	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0163399_20	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-0163399_21	PHROG	phrog_1194	NA	unknown function
UHGV-0163399_21	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0163399_21	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0163399_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0163399_22	eggNOG-mapper	411471.SUBVAR_06934	tape measure	NA
UHGV-0163399_22	COG	COG5412	Phage-related protein	NA
UHGV-0163399_23	PHROG	phrog_706	NA	unknown function
UHGV-0163399_23	UniRef90	UniRef90_UPI0019671E36	Gp15 family bacteriophage protein	NA
UHGV-0163399_23	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0163399_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0163399_23	Structural annotation	PF06854	NA	NA
UHGV-0163399_24	PHROG	phrog_11299	NA	unknown function
UHGV-0163399_24	UniRef90	UniRef90_UPI001C03A209	V-type proton ATPase subunit E	NA
UHGV-0163399_24	eggNOG-mapper	1226322.HMPREF1545_00057	NA	NA
UHGV-0163399_25	KOfam	K01887	RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]	NA
UHGV-0163399_25	PHROG	phrog_15344	NA	unknown function
UHGV-0163399_25	UniRef90	UniRef90_A0A367G8N2	Arginine--tRNA ligase	NA
UHGV-0163399_25	eggNOG-mapper	411471.SUBVAR_06446	Arginyl-tRNA synthetase	NA
UHGV-0163399_25	Pfam	PF03485	Arginyl tRNA synthetase N terminal domain	Arg_tRNA_synt_N
UHGV-0163399_25	Pfam	PF00750	tRNA synthetases class I (R)	tRNA-synt_1d
UHGV-0163399_25	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0163399_25	NCBIFam	TIGR00456.1	arginine--tRNA ligase	NA
UHGV-0163399_25	COG	COG0018	Arginyl-tRNA synthetase	NA
UHGV-0163399_25	HAMAP	MF_00123	Arginine--tRNA ligase [argS]	NA