UHGV-0163401

Genome information

Genome length 40,805 bps

CDS count 64

Completeness 95.08% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163401
vOTU ID	vOTU-010738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_551962
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.21
Jumbo phage	No

Genome content
Genome length	40,805 bps
GC content	46.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.85%
Average CDS length	581.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163401_1	PHROG	phrog_4433	NA	unknown function
UHGV-0163401_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0163401_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0163401_2	Structural annotation	PF04936	NA	NA
UHGV-0163401_4	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163401_4	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0163401_4	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0163401_5	PHROG	phrog_1029	NA	unknown function
UHGV-0163401_5	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0163401_5	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0163401_5	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0163401_6	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0163401_6	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0163401_7	PHROG	phrog_2113	NA	unknown function
UHGV-0163401_8	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163401_8	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0163401_8	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0163401_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0163401_8	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0163401_9	PHROG	phrog_7566	NA	unknown function
UHGV-0163401_9	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0163401_9	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0163401_10	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163401_10	UniRef90	UniRef90_A0A0V8QI93	NA	NA
UHGV-0163401_10	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-0163401_10	Pfam	PF12684	NA	DUF3799
UHGV-0163401_10	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0163401_10	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0163401_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163401_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163401_11	UniRef90	UniRef90_A0A395V2C2	Recombinase	NA
UHGV-0163401_11	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0163401_11	Pfam	PF03837	RecT family	RecT
UHGV-0163401_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163401_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0163401_12	PHROG	phrog_30234	NA	unknown function
UHGV-0163401_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0163401_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163401_18	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0163401_18	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163401_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163401_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163401_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0163401_20	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0163401_20	PHROG	phrog_10292	NA	unknown function
UHGV-0163401_20	UniRef90	UniRef90_UPI0011DD6C00	NINE protein	NA
UHGV-0163401_20	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0163401_20	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0163401_20	Pfam	PF05154	TM2 domain	TM2
UHGV-0163401_20	COG	COG2314	NA	NA
UHGV-0163401_20	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0163401_21	KOfam	K14059	int; integrase	NA
UHGV-0163401_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0163401_21	UniRef90	UniRef90_A0A6N7W462	Site-specific integrase	NA
UHGV-0163401_21	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0163401_21	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0163401_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163401_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163401_21	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0163401_22	KOfam	K07273	acm; lysozyme	NA
UHGV-0163401_22	PHROG	phrog_291	endolysin	lysis
UHGV-0163401_22	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-0163401_22	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-0163401_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0163401_22	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0163401_22	Structural annotation	PF01183, TIGR00612, COG3757	NA	NA
UHGV-0163401_23	PHROG	phrog_918	NA	unknown function
UHGV-0163401_23	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-0163401_23	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0163401_23	Pfam	PF19791	NA	DUF6275
UHGV-0163401_23	Structural annotation	PF19791	NA	NA
UHGV-0163401_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0163401_24	UniRef90	UniRef90_UPI001C3A3ABC	NA	NA
UHGV-0163401_24	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0163401_24	Structural annotation	PF14359	NA	NA
UHGV-0163401_25	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0163401_26	UniRef90	UniRef90_U2BK79	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0163401_26	eggNOG-mapper	1226325.HMPREF1548_00749	NA	NA
UHGV-0163401_27	PHROG	phrog_18593	NA	unknown function
UHGV-0163401_27	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-0163401_27	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0163401_27	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0163401_27	Structural annotation	PF14600	NA	NA
UHGV-0163401_31	PHROG	phrog_18725	NA	unknown function
UHGV-0163401_31	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0163401_32	PHROG	phrog_13879	NA	unknown function
UHGV-0163401_32	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0163401_32	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0163401_33	PHROG	phrog_1194	NA	unknown function
UHGV-0163401_33	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0163401_33	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0163401_34	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-0163401_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0163401_34	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0163401_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0163401_35	PHROG	phrog_706	NA	unknown function
UHGV-0163401_35	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0163401_35	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0163401_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0163401_35	Structural annotation	PF06854	NA	NA
UHGV-0163401_36	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0163401_36	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0163401_36	Structural annotation	PF10666	NA	NA
UHGV-0163401_37	PHROG	phrog_3099	NA	unknown function
UHGV-0163401_37	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0163401_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0163401_38	PHROG	phrog_3266	tail completion	connector
UHGV-0163401_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0163401_38	Structural annotation	PF12691	NA	NA
UHGV-0163401_39	PHROG	phrog_3366	NA	unknown function
UHGV-0163401_39	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0163401_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0163401_40	PHROG	phrog_8680	NA	unknown function
UHGV-0163401_40	UniRef90	UniRef90_A0A3R6MNB4	NA	NA
UHGV-0163401_40	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0163401_40	Pfam	PF14386	NA	DUF4417
UHGV-0163401_40	Structural annotation	PF14386	NA	NA
UHGV-0163401_42	PHROG	phrog_1129	holin	lysis
UHGV-0163401_42	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0163401_42	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0163401_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0163401_42	Structural annotation	PF06946	NA	NA
UHGV-0163401_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0163401_43	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0163401_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0163401_44	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0163401_44	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0163401_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0163401_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0163401_45	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0163401_45	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0163401_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0163401_46	PHROG	phrog_28802	NA	unknown function
UHGV-0163401_46	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0163401_47	PHROG	phrog_20016	NA	unknown function
UHGV-0163401_47	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0163401_47	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0163401_47	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0163401_48	PHROG	phrog_16490	NA	unknown function
UHGV-0163401_48	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0163401_49	PHROG	phrog_22984	NA	unknown function
UHGV-0163401_50	PHROG	phrog_21718	NA	unknown function
UHGV-0163401_50	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0163401_51	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0163401_51	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0163401_51	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0163401_51	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0163401_52	PHROG	phrog_3754	NA	unknown function
UHGV-0163401_52	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0163401_53	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0163401_53	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0163401_53	eggNOG-mapper	663278.Ethha_0499	NA	NA
UHGV-0163401_53	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0163401_53	COG	COG2369	NA	NA
UHGV-0163401_53	Structural annotation	PF06152	NA	NA
UHGV-0163401_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0163401_54	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0163401_54	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0163401_54	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0163401_54	Structural annotation	PF11114	NA	NA
UHGV-0163401_55	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0163401_56	PHROG	phrog_533	portal protein	head and packaging
UHGV-0163401_56	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0163401_56	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0163401_56	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0163401_57	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163401_57	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0163401_57	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0163401_57	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0163401_57	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0163401_57	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0163401_57	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0163401_57	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163401_57	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163401_57	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0163401_58	PHROG	phrog_33130	NA	unknown function
UHGV-0163401_58	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0163401_58	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0163401_59	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0163401_61	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0163401_61	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0163401_61	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0163401_61	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0163401_61	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0163401_61	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0163401_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0163401_61	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0163401_64	PHROG	phrog_27197	NA	unknown function
UHGV-0163401_64	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0163401_64	Structural annotation	NF007410	NA	NA