UHGV-0163457

Genome information

Genome length 29,113 bps

CDS count 43

Completeness 82.52% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163457
vOTU ID	vOTU-022269
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_536689
BioSample	SAMN06164861
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.88
Jumbo phage	No

Genome content
Genome length	29,113 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.81%
Average CDS length	619.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163457_1	PHROG	phrog_13589	NA	unknown function
UHGV-0163457_1	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0163457_2	PHROG	phrog_31538	NA	unknown function
UHGV-0163457_2	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0163457_3	PHROG	phrog_15594	NA	unknown function
UHGV-0163457_3	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0163457_3	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0163457_4	UniRef90	UniRef90_A0A2V2D4A1	XkdX family protein	NA
UHGV-0163457_4	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0163457_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0163457_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0163457_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0163457_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0163457_6	UniRef90	UniRef90_A0A1C5N0E2	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0163457_6	eggNOG-mapper	478749.BRYFOR_08556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0163457_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0163457_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0163457_6	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0163457_7	PHROG	phrog_17147	NA	unknown function
UHGV-0163457_7	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0163457_7	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0163457_8	PHROG	phrog_16164	NA	unknown function
UHGV-0163457_8	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0163457_9	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0163457_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0163457_10	PHROG	phrog_14030	NA	unknown function
UHGV-0163457_10	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0163457_10	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0163457_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0163457_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0163457_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0163457_10	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0163457_11	PHROG	phrog_13289	tail protein	tail
UHGV-0163457_11	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0163457_11	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0163457_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0163457_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0163457_11	COG	COG4926	Phage-related protein	NA
UHGV-0163457_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0163457_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0163457_12	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0163457_12	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0163457_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0163457_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0163457_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0163457_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0163457_13	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0163457_13	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0163457_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0163457_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0163457_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0163457_15	PHROG	phrog_88	major tail protein	tail
UHGV-0163457_15	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0163457_15	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0163457_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0163457_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0163457_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0163457_16	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0163457_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0163457_16	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0163457_17	Structural annotation	PF05657	NA	NA
UHGV-0163457_18	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0163457_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0163457_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0163457_19	PHROG	phrog_749	NA	unknown function
UHGV-0163457_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0163457_20	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0163457_20	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0163457_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0163457_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0163457_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0163457_20	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0163457_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0163457_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0163457_21	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0163457_21	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0163457_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0163457_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0163457_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0163457_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0163457_22	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0163457_22	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0163457_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0163457_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0163457_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0163457_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163457_23	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0163457_23	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0163457_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0163457_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0163457_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163457_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0163457_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0163457_24	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0163457_24	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0163457_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0163457_24	COG	COG5484	NA	NA
UHGV-0163457_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0163457_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0163457_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163457_25	UniRef90	UniRef90_A0A373MPW5	HNH endonuclease	NA
UHGV-0163457_25	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0163457_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0163457_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163457_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0163457_26	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0163457_26	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0163457_26	Pfam	PF07374	NA	DUF1492
UHGV-0163457_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0163457_26	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0163457_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0163457_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163457_29	UniRef90	UniRef90_A0A844KFT8	Helix-turn-helix domain-containing protein	NA
UHGV-0163457_29	eggNOG-mapper	1048834.TC41_2515	sequence-specific DNA binding	NA
UHGV-0163457_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163457_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0163457_30	PHROG	phrog_8684	NA	unknown function
UHGV-0163457_30	UniRef90	UniRef90_A0A373MXN9	YopX domain-containing protein	NA
UHGV-0163457_30	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0163457_30	Pfam	PF09643	YopX protein	YopX
UHGV-0163457_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0163457_32	PHROG	phrog_7566	NA	unknown function
UHGV-0163457_32	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0163457_33	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0163457_36	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0163457_37	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0163457_37	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0163457_37	UniRef90	UniRef90_A0A373MPV2	Ribonuclease HI	NA
UHGV-0163457_37	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0163457_37	Pfam	PF00075	RNase H	RNase_H
UHGV-0163457_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0163457_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0163457_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163457_38	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0163457_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0163457_41	PHROG	phrog_9607	NA	unknown function
UHGV-0163457_41	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0163457_41	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA