UHGV-0163556

Genome information

Genome length 44,994 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163556
vOTU ID	vOTU-046337
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539507
BioSample	SAMN06328455
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.3
Jumbo phage	No

Genome content
Genome length	44,994 bps
GC content	53.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	90.19%
Average CDS length	530.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163556_1	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0163556_2	PHROG	phrog_3266	tail completion	connector
UHGV-0163556_2	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0163556_2	Structural annotation	PF12691	NA	NA
UHGV-0163556_3	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0163556_3	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0163556_3	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0163556_3	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0163556_3	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0163556_4	PHROG	phrog_3366	NA	unknown function
UHGV-0163556_4	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0163556_4	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0163556_5	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0163556_5	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0163556_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-0163556_6	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0163556_6	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0163556_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0163556_6	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0163556_7	PHROG	phrog_909	major head protein	head and packaging
UHGV-0163556_7	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0163556_7	eggNOG-mapper	60520.HR47_13470	NA	NA
UHGV-0163556_7	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0163556_7	Structural annotation	PF02924	NA	NA
UHGV-0163556_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0163556_8	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0163556_8	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0163556_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0163556_8	Structural annotation	PF06810	NA	NA
UHGV-0163556_9	Structural annotation	PF19593	NA	NA
UHGV-0163556_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0163556_11	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0163556_11	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0163556_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0163556_11	COG	COG2369	NA	NA
UHGV-0163556_11	Structural annotation	PF06152	NA	NA
UHGV-0163556_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0163556_12	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0163556_12	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0163556_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0163556_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163556_13	PHROG	phrog_10250	NA	unknown function
UHGV-0163556_13	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0163556_13	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0163556_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0163556_13	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0163556_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163556_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163556_13	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0163556_14	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0163556_14	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0163556_14	Structural annotation	PF04218, COG3677	NA	NA
UHGV-0163556_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163556_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163556_15	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0163556_15	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0163556_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0163556_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163556_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0163556_18	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0163556_19	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0163556_19	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0163556_19	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0163556_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0163556_21	UniRef90	UniRef90_A0A1M6HP95	Restriction alleviation protein, Lar family	NA
UHGV-0163556_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0163556_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0163556_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0163556_21	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0163556_21	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0163556_22	PHROG	phrog_38832	NA	unknown function
UHGV-0163556_22	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0163556_22	Structural annotation	PF18300, MF_01549, TIGR02450	NA	NA
UHGV-0163556_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0163556_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0163556_25	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0163556_25	eggNOG-mapper	1291050.JAGE01000001_gene1109	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0163556_25	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0163556_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0163556_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0163556_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0163556_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163556_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163556_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163556_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163556_27	UniRef90	UniRef90_A0A0U3FVI4	HTH domain-containing protein	NA
UHGV-0163556_27	eggNOG-mapper	555088.DealDRAFT_1919	PFAM Helix-turn-helix	NA
UHGV-0163556_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0163556_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163556_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0163556_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163556_27	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0163556_29	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163556_29	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0163556_29	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0163556_29	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0163556_29	Pfam	PF06356	NA	DUF1064
UHGV-0163556_30	PHROG	phrog_15768	NA	unknown function
UHGV-0163556_30	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0163556_30	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0163556_30	AcrCatalog	cluster_38323	NA	NA
UHGV-0163556_30	Pfam	PF19808	NA	DUF6291
UHGV-0163556_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0163556_30	Structural annotation	PF19808	NA	NA
UHGV-0163556_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0163556_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0163556_31	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0163556_31	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0163556_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0163556_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0163556_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0163556_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0163556_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0163556_32	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0163556_32	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-0163556_32	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0163556_32	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0163556_32	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0163556_32	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0163556_33	PHROG	phrog_3657	NA	unknown function
UHGV-0163556_33	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0163556_33	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-0163556_34	PHROG	phrog_674	NA	unknown function
UHGV-0163556_34	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0163556_34	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0163556_34	Pfam	PF07083	NA	DUF1351
UHGV-0163556_34	Structural annotation	PF07083	NA	NA
UHGV-0163556_36	PHROG	phrog_22529	NA	unknown function
UHGV-0163556_36	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0163556_36	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0163556_36	Pfam	PF06725	3D domain	3D
UHGV-0163556_36	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0163556_36	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0163556_39	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0163556_39	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0163556_40	PHROG	phrog_15946	NA	unknown function
UHGV-0163556_40	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0163556_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163556_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163556_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163556_43	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0163556_43	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0163556_47	UniRef90	UniRef90_A7VNR4	HTH cro/C1-type domain-containing protein	NA
UHGV-0163556_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163556_47	COG	COG1426	NA	NA
UHGV-0163556_47	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0163556_48	KOfam	K14059	int; integrase	NA
UHGV-0163556_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0163556_48	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0163556_48	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0163556_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163556_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163556_48	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0163556_49	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0163556_50	PHROG	phrog_28802	NA	unknown function
UHGV-0163556_50	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0163556_51	PHROG	phrog_20016	NA	unknown function
UHGV-0163556_51	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0163556_51	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0163556_51	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0163556_52	PHROG	phrog_16490	NA	unknown function
UHGV-0163556_52	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0163556_53	PHROG	phrog_22984	NA	unknown function
UHGV-0163556_54	PHROG	phrog_21718	NA	unknown function
UHGV-0163556_54	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0163556_55	PHROG	phrog_3754	NA	unknown function
UHGV-0163556_55	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0163556_59	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0163556_59	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163556_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163556_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163556_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163556_60	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163556_60	UniRef90	UniRef90_A0A351TR50	Transcriptional regulator	NA
UHGV-0163556_60	eggNOG-mapper	478749.BRYFOR_06178	AP2 domain protein	NA
UHGV-0163556_60	Structural annotation	PF17375	NA	NA
UHGV-0163556_61	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0163556_61	PHROG	phrog_6523	endolysin	lysis
UHGV-0163556_61	UniRef90	UniRef90_A0A316L774	SLH domain-containing protein	NA
UHGV-0163556_61	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0163556_61	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0163556_61	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0163556_61	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0163556_62	PHROG	phrog_13256	NA	unknown function
UHGV-0163556_62	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0163556_64	PHROG	phrog_937	hemolysin	other
UHGV-0163556_64	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0163556_65	PHROG	phrog_27545	NA	unknown function
UHGV-0163556_65	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0163556_65	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0163556_65	Structural annotation	PF16170	NA	NA
UHGV-0163556_66	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0163556_66	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0163556_66	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0163556_67	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0163556_67	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0163556_69	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0163556_70	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0163556_70	Structural annotation	PF14594	NA	NA
UHGV-0163556_71	PHROG	phrog_32308	NA	unknown function
UHGV-0163556_71	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0163556_71	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0163556_71	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0163556_72	PHROG	phrog_1194	NA	unknown function
UHGV-0163556_72	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0163556_72	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0163556_73	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0163556_73	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0163556_73	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0163556_73	COG	COG1511	NA	NA
UHGV-0163556_73	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0163556_74	PHROG	phrog_17658	NA	unknown function
UHGV-0163556_74	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0163556_74	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0163556_74	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0163556_75	PHROG	phrog_706	NA	unknown function
UHGV-0163556_75	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0163556_75	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0163556_75	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0163556_75	Structural annotation	PF06854	NA	NA
UHGV-0163556_76	PHROG	phrog_11299	NA	unknown function
UHGV-0163556_76	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0163556_76	Structural annotation	PF10666	NA	NA
UHGV-0163556_77	PHROG	phrog_3099	NA	unknown function
UHGV-0163556_77	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA