UHGV-0163573

Genome information

Genome length 16,066 bps

CDS count 27

Completeness 65.76% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163573
vOTU ID	vOTU-028125
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_502079
BioSample	SAMN06110196
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.89
Jumbo phage	No

Genome content
Genome length	16,066 bps
GC content	42.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	97.35%
Average CDS length	584.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163573_1	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0163573_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0163573_1	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0163573_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0163573_2	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0163573_2	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0163573_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0163573_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0163573_2	COG	COG4926	Phage-related protein	NA
UHGV-0163573_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0163573_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0163573_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0163573_3	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0163573_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0163573_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0163573_4	PHROG	phrog_23464	NA	unknown function
UHGV-0163573_4	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0163573_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0163573_4	Structural annotation	COG3941	NA	NA
UHGV-0163573_6	PHROG	phrog_1021	NA	unknown function
UHGV-0163573_7	PHROG	phrog_885	major tail protein	tail
UHGV-0163573_7	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0163573_7	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0163573_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0163573_8	Structural annotation	PF12691	NA	NA
UHGV-0163573_9	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0163573_9	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0163573_9	Structural annotation	TIGR01725	NA	NA
UHGV-0163573_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0163573_10	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0163573_10	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0163573_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0163573_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0163573_11	PHROG	phrog_5223	neck protein	connector
UHGV-0163573_11	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-0163573_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0163573_11	Structural annotation	TIGR01560	NA	NA
UHGV-0163573_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0163573_12	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0163573_12	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0163573_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0163573_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0163573_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0163573_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0163573_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0163573_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0163573_13	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0163573_13	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0163573_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0163573_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0163573_13	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0163573_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0163573_14	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0163573_14	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0163573_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0163573_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0163573_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0163573_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163573_15	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0163573_15	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0163573_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0163573_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0163573_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163573_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0163573_16	PHROG	phrog_1066	NA	unknown function
UHGV-0163573_16	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0163573_16	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0163573_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163573_17	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0163573_17	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0163573_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0163573_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163573_18	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0163573_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163573_18	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0163573_21	PHROG	phrog_25754	NA	unknown function
UHGV-0163573_21	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0163573_21	Structural annotation	PF06372, NF041655	NA	NA
UHGV-0163573_22	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0163573_22	Structural annotation	PF15597	NA	NA
UHGV-0163573_25	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0163573_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0163573_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163573_26	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0163573_26	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0163573_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0163573_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0163573_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0163573_27	PHROG	phrog_16687	NA	unknown function
UHGV-0163573_27	eggNOG-mapper	1123511.KB905868_gene197	NA	NA