UHGV-0163575

Genome information

Genome length 32,690 bps

CDS count 59

Completeness 72.29% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163575
vOTU ID	vOTU-028126
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_502105
BioSample	SAMN06110263
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.86
Jumbo phage	No

Genome content
Genome length	32,690 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.35%
Average CDS length	499.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163575_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163575_1	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0163575_1	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0163575_1	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0163575_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0163575_1	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163575_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163575_4	PHROG	phrog_10714	NA	unknown function
UHGV-0163575_6	Structural annotation	PF09038	NA	NA
UHGV-0163575_10	PHROG	phrog_8684	NA	unknown function
UHGV-0163575_10	UniRef90	UniRef90_A0A174LJM6	YopX protein	NA
UHGV-0163575_10	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0163575_10	Pfam	PF09643	YopX protein	YopX
UHGV-0163575_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0163575_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0163575_11	PHROG	phrog_20593	NA	unknown function
UHGV-0163575_14	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0163575_14	AcrCatalog	cluster_11670	NA	NA
UHGV-0163575_17	PHROG	phrog_15198	NA	unknown function
UHGV-0163575_17	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-0163575_17	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0163575_17	Pfam	PF04448	NA	DUF551
UHGV-0163575_18	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0163575_18	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0163575_19	PHROG	phrog_4601	NA	unknown function
UHGV-0163575_19	Structural annotation	PF17888	NA	NA
UHGV-0163575_20	Structural annotation	COG4446	NA	NA
UHGV-0163575_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0163575_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163575_21	UniRef90	UniRef90_UPI001C10B5DE	helix-turn-helix transcriptional regulator	NA
UHGV-0163575_21	eggNOG-mapper	1353537.TP2_06560	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163575_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163575_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163575_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0163575_23	UniRef90	UniRef90_A0A412ELN5	LexA_DNA_bind domain-containing protein	NA
UHGV-0163575_23	eggNOG-mapper	994573.T472_0218310	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0163575_23	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0163575_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0163575_23	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0163575_24	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0163575_24	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0163575_25	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0163575_25	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0163575_25	UniRef90	UniRef90_UPI001D06D025	ATP-binding protein	NA
UHGV-0163575_25	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0163575_25	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0163575_25	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0163575_25	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0163575_26	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0163575_26	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0163575_26	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0163575_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0163575_26	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0163575_27	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163575_27	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0163575_27	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0163575_28	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0163575_28	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0163575_29	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0163575_29	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0163575_29	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0163575_30	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163575_30	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0163575_30	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0163575_31	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0163575_31	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-0163575_31	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0163575_31	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0163575_31	Structural annotation	PF05565	NA	NA
UHGV-0163575_33	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0163575_35	UniRef90	UniRef90_A0A395X9S5	Toxin HipA	NA
UHGV-0163575_35	eggNOG-mapper	478749.BRYFOR_05417	NA	NA
UHGV-0163575_37	PHROG	phrog_7964	NA	unknown function
UHGV-0163575_37	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0163575_37	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0163575_37	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0163575_37	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0163575_37	Structural annotation	MF_00523, NF040481, COG1043	NA	NA
UHGV-0163575_39	Structural annotation	COG1321	NA	NA
UHGV-0163575_41	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0163575_44	UniRef90	UniRef90_A0A1M6M2C3	DNA binding domain-containing protein, excisionase family	NA
UHGV-0163575_44	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0163575_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0163575_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0163575_44	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0163575_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0163575_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0163575_45	UniRef90	UniRef90_R5GZQ0	Helix-turn-helix protein	NA
UHGV-0163575_45	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0163575_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0163575_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163575_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163575_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0163575_48	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0163575_48	PHROG	phrog_8810	NA	unknown function
UHGV-0163575_48	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0163575_48	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0163575_48	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0163575_48	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0163575_48	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0163575_48	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0163575_49	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0163575_49	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0163575_49	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0163575_49	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0163575_49	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0163575_50	KOfam	K14059	int; integrase	NA
UHGV-0163575_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0163575_50	UniRef90	UniRef90_A0A395X9D5	Site-specific integrase	NA
UHGV-0163575_50	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0163575_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163575_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163575_50	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0163575_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0163575_51	PHROG	phrog_6745	endolysin	lysis
UHGV-0163575_51	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-0163575_51	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0163575_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0163575_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0163575_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0163575_51	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0163575_51	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-0163575_52	UniRef90	UniRef90_UPI001D05E3B7	H-type lectin domain-containing protein	NA
UHGV-0163575_52	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0163575_53	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0163575_54	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0163575_54	PHROG	phrog_6616	tail protein	tail
UHGV-0163575_54	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0163575_54	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0163575_54	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0163575_54	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0163575_54	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0163575_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0163575_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0163575_56	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0163575_56	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0163575_56	COG	COG1511	NA	NA
UHGV-0163575_56	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0163575_57	PHROG	phrog_706	NA	unknown function
UHGV-0163575_57	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0163575_57	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0163575_57	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0163575_57	Structural annotation	PF06854	NA	NA
UHGV-0163575_58	PHROG	phrog_11299	NA	unknown function
UHGV-0163575_58	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0163575_58	Structural annotation	PF10666	NA	NA
UHGV-0163575_59	PHROG	phrog_3099	NA	unknown function
UHGV-0163575_59	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA