UHGV-0163616

Genome information

Genome length 35,419 bps

CDS count 54

Completeness 89.83% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163616
vOTU ID	vOTU-022272
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_524152
BioSample	SAMN06164737
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	42
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	116.22
Jumbo phage	No

Genome content
Genome length	35,419 bps
GC content	47.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.06%
Average CDS length	593.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163616_1	KOfam	K22247	neuO; polysialic-acid O-acetyltransferase [EC:2.3.1.136]	NA
UHGV-0163616_1	PHROG	phrog_30105	NA	unknown function
UHGV-0163616_1	UniRef90	UniRef90_UPI000DFE0ACC	acyltransferase	NA
UHGV-0163616_1	eggNOG-mapper	1149133.ppKF707_1934	acetyltransferase, isoleucine patch superfamily	NA
UHGV-0163616_1	COG	COG0110	Acetyltransferase, isoleucine patch superfamily	NA
UHGV-0163616_2	KOfam	K16709	amsF; amylovoran biosynthesis protein AmsF	NA
UHGV-0163616_2	PHROG	phrog_8280	tail spike protein with colonic acid degradation activity	tail
UHGV-0163616_2	UniRef90	UniRef90_A0A8I0NK72	Tail fiber domain-containing protein	NA
UHGV-0163616_2	eggNOG-mapper	1524881.A0A088CQ58_9CAUD	pathogenesis	NA
UHGV-0163616_2	Pfam	PF09008	Head binding	Head_binding
UHGV-0163616_2	Structural annotation	PF09008	NA	NA
UHGV-0163616_3	PHROG	phrog_770	DNA transfer protein	other
UHGV-0163616_3	UniRef90	UniRef90_A0A6N0IRR6	Lytic transglycosylase domain-containing protein	NA
UHGV-0163616_3	eggNOG-mapper	10761.Q716G2_BPSFV	NA	NA
UHGV-0163616_4	PHROG	phrog_2534	released from the phage upon host infection	other
UHGV-0163616_4	UniRef90	UniRef90_A0A4Y8GQR9	Acyltransferase	NA
UHGV-0163616_4	eggNOG-mapper	10761.Q716G3_BPSFV	Pfam:Inj_translocase	NA
UHGV-0163616_4	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0163616_5	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0163616_5	UniRef90	UniRef90_Q716G4	Gene 11 protein	NA
UHGV-0163616_5	eggNOG-mapper	1090133.G5DA80_9CAUD	viral entry into host cell	NA
UHGV-0163616_6	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0163616_6	UniRef90	UniRef90_G8EYJ5	Head assembly protein	NA
UHGV-0163616_6	eggNOG-mapper	10761.Q716G5_BPSFV	NA	NA
UHGV-0163616_6	Pfam	PF11039	NA	DUF2824
UHGV-0163616_6	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0163616_7	PHROG	phrog_1030	NA	unknown function
UHGV-0163616_7	UniRef90	UniRef90_A0A1Q6AUB3	Phage_tail_NK domain-containing protein	NA
UHGV-0163616_7	eggNOG-mapper	10761.Q716G6_BPSFV	Pfam:Phage_tail_NK	NA
UHGV-0163616_7	Pfam	PF16532	Sf6-type phage tail needle knob or tip of some Caudovirales	Phage_tail_NK
UHGV-0163616_7	Structural annotation	PF16532, NF033147	NA	NA
UHGV-0163616_8	PHROG	phrog_578	head closure Hc3	connector
UHGV-0163616_8	UniRef90	UniRef90_P26749	Packaged DNA stabilization protein gp10	NA
UHGV-0163616_8	eggNOG-mapper	155148.Q9AYZ4_BPHK6	Phage stabilisation protein	NA
UHGV-0163616_8	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0163616_8	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0163616_9	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0163616_9	UniRef90	UniRef90_A0A066T024	DNA stabilization protein	NA
UHGV-0163616_9	eggNOG-mapper	754331.AEME01000001_gene10	Packaged DNA stabilization protein gp4	NA
UHGV-0163616_9	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0163616_9	Structural annotation	PF11650	NA	NA
UHGV-0163616_10	PHROG	phrog_1175	NA	unknown function
UHGV-0163616_11	PHROG	phrog_283	major head protein	head and packaging
UHGV-0163616_11	UniRef90	UniRef90_A0A7L7ST24	Coat protein	NA
UHGV-0163616_11	eggNOG-mapper	754331.AEME01000001_gene8	P22 coat protein - gene protein 5	NA
UHGV-0163616_11	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0163616_11	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0163616_12	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0163616_12	UniRef90	UniRef90_A0A6C9DRL0	Scaffolding protein	NA
UHGV-0163616_12	eggNOG-mapper	754331.AEME01000001_gene7	NA	NA
UHGV-0163616_12	Structural annotation	PF09306	NA	NA
UHGV-0163616_13	PHROG	phrog_14911	NA	unknown function
UHGV-0163616_13	UniRef90	UniRef90_E9TCA7	Putative ATP synthase F1, epsilon subunit	NA
UHGV-0163616_13	eggNOG-mapper	1524881.A0A088CQ69_9CAUD	actin binding	NA
UHGV-0163616_13	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0163616_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0163616_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163616_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0163616_14	UniRef90	UniRef90_Q9AZ00	Terminase large subunit	NA
UHGV-0163616_14	eggNOG-mapper	754331.AEME01000001_gene5	Phage terminase, large subunit	NA
UHGV-0163616_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0163616_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163616_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163616_14	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0163616_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0163616_15	UniRef90	UniRef90_A0A0C5EQ63	Terminase	NA
UHGV-0163616_15	eggNOG-mapper	716541.ECL_03566	transposase activity	NA
UHGV-0163616_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0163616_15	Structural annotation	PF07141	NA	NA
UHGV-0163616_16	PHROG	phrog_571	NA	unknown function
UHGV-0163616_16	UniRef90	UniRef90_A0A067HHZ1	NA	NA
UHGV-0163616_16	eggNOG-mapper	10761.Q716B0_BPSFV	NA	NA
UHGV-0163616_16	Pfam	PF10834	NA	DUF2560
UHGV-0163616_16	Structural annotation	PF10834	NA	NA
UHGV-0163616_17	PHROG	phrog_5425	NA	unknown function
UHGV-0163616_18	PHROG	phrog_875	NA	unknown function
UHGV-0163616_18	eggNOG-mapper	155148.Q9AZ04_BPHK6	NA	NA
UHGV-0163616_19	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0163616_19	UniRef90	UniRef90_A0A1Y2XHC5	DNA-binding protein	NA
UHGV-0163616_19	eggNOG-mapper	155148.Q9AZ05_BPHK6	KilA-N domain	NA
UHGV-0163616_19	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0163616_19	Pfam	PF10549	ORF11CD3 domain	ORF11CD3
UHGV-0163616_20	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0163616_20	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0163616_20	UniRef90	UniRef90_B7LBM9	Bacteriophage lysis protein	NA
UHGV-0163616_20	eggNOG-mapper	1524881.A0A088CQ67_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0163616_20	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0163616_20	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0163616_20	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0163616_21	PHROG	phrog_17029	NA	unknown function
UHGV-0163616_21	UniRef90	UniRef90_P03706	Endolysin	NA
UHGV-0163616_21	eggNOG-mapper	1524881.A0A088CPU7_9CAUD	Phage lysozyme	NA
UHGV-0163616_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0163616_21	HAMAP	MF_04109	Endolysin	NA
UHGV-0163616_21	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0163616_22	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0163616_22	UniRef90	UniRef90_P03705	Antiholin	NA
UHGV-0163616_22	eggNOG-mapper	10761.Q716B7_BPSFV	Pfam:Phage_holin_3_1	NA
UHGV-0163616_22	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0163616_22	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0163616_22	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0163616_23	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0163616_23	UniRef90	UniRef90_E2QJL6	Antitermination protein	NA
UHGV-0163616_23	eggNOG-mapper	1090133.G8EYI3_9CAUD	heat shock protein binding	NA
UHGV-0163616_23	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0163616_23	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0163616_24	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0163616_24	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163616_24	UniRef90	UniRef90_A0A152CN92	Serine/threonine protein phosphatase	NA
UHGV-0163616_24	eggNOG-mapper	432201.K7P7K6_9CAUD	hydrolase activity	NA
UHGV-0163616_24	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0163616_24	Structural annotation	PF12850, MF_01443, NF008516, COG0622	NA	NA
UHGV-0163616_25	PHROG	phrog_268	NA	unknown function
UHGV-0163616_25	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-0163616_25	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-0163616_25	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-0163616_25	Structural annotation	PF06322	NA	NA
UHGV-0163616_26	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163616_26	UniRef90	UniRef90_P03770	Protein ninG	NA
UHGV-0163616_26	eggNOG-mapper	1147145.K7P6N9_9CAUD	Bacteriophage Lambda NinG protein	NA
UHGV-0163616_26	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0163616_26	Structural annotation	PF05766	NA	NA
UHGV-0163616_27	PHROG	phrog_1511	NA	unknown function
UHGV-0163616_27	eggNOG-mapper	1147146.K7P8B7_9CAUD	exonuclease activity	NA
UHGV-0163616_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0163616_28	UniRef90	UniRef90_A0A658Z0K6	Recombination protein	NA
UHGV-0163616_28	eggNOG-mapper	1147146.K7P746_9CAUD	NinB protein	NA
UHGV-0163616_28	Pfam	PF05772	NinB protein	NinB
UHGV-0163616_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0163616_29	PHROG	phrog_343	NA	unknown function
UHGV-0163616_29	UniRef90	UniRef90_Q716C8	Gene 48 protein	NA
UHGV-0163616_29	eggNOG-mapper	10761.Q716C8_BPSFV	NA	NA
UHGV-0163616_30	PHROG	phrog_1165	NA	unknown function
UHGV-0163616_30	UniRef90	UniRef90_A0A0P7PW10	Membrane protein	NA
UHGV-0163616_30	eggNOG-mapper	1147153.K7PKH6_9CAUD	NA	NA
UHGV-0163616_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0163616_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0163616_31	UniRef90	UniRef90_A0A625CCT9	DNA helicase	NA
UHGV-0163616_31	eggNOG-mapper	194949.Q7Y2K5_9CAUD	DnaB-like helicase N terminal domain	NA
UHGV-0163616_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0163616_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0163616_31	NCBIFam	TIGR03600.1	phage replicative helicase, DnaB family	NA
UHGV-0163616_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0163616_32	PHROG	phrog_24933	NA	unknown function
UHGV-0163616_32	UniRef90	UniRef90_A0A0K4ZM66	DNA replication protein	NA
UHGV-0163616_32	eggNOG-mapper	10761.Q716D3_BPSFV	calcium ion binding	NA
UHGV-0163616_32	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0163616_33	PHROG	phrog_1331	NA	unknown function
UHGV-0163616_33	UniRef90	UniRef90_A0A0J2A1R9	NA	NA
UHGV-0163616_33	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0163616_34	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0163616_34	UniRef90	UniRef90_A0A137BYM9	Lambda phage CII family protein	NA
UHGV-0163616_34	eggNOG-mapper	155148.Q9AZ19_BPHK6	Bacteriophage CII protein	NA
UHGV-0163616_34	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0163616_34	Structural annotation	PF05269	NA	NA
UHGV-0163616_35	UniRef90	UniRef90_A0A0C2AWU6	Cro	NA
UHGV-0163616_35	eggNOG-mapper	1147143.K7P6T9_9CAUD	Cro	NA
UHGV-0163616_35	Pfam	PF09048	Cro	Cro
UHGV-0163616_35	Structural annotation	PF09048	NA	NA
UHGV-0163616_36	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0163616_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0163616_36	UniRef90	UniRef90_Q9AZ21	Repressor protein cI	NA
UHGV-0163616_36	eggNOG-mapper	1147143.K7P7K3_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0163616_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163616_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0163616_36	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0163616_37	PHROG	phrog_6534	NA	unknown function
UHGV-0163616_37	eggNOG-mapper	1147146.K7P7U3_9CAUD	NA	NA
UHGV-0163616_38	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0163616_38	UniRef90	UniRef90_K7P7A1	Anti-termination protein N	NA
UHGV-0163616_38	eggNOG-mapper	1147146.K7P8A7_9CAUD	NA	NA
UHGV-0163616_39	PHROG	phrog_1301	superinfection exclusion; inhibits SieB	moron, auxiliary metabolic gene and host takeover
UHGV-0163616_39	UniRef90	UniRef90_A0A0H3EFF2	Superinfection exclusion protein B	NA
UHGV-0163616_39	eggNOG-mapper	10754.SIEB_BPP22	Superinfection exclusion protein B	NA
UHGV-0163616_39	Pfam	PF14163	Super-infection exclusion protein B	SieB
UHGV-0163616_40	PHROG	phrog_33140	NA	unknown function
UHGV-0163616_41	PHROG	phrog_1273	NA	unknown function
UHGV-0163616_41	UniRef90	UniRef90_Q76H36	ORF18	NA
UHGV-0163616_41	eggNOG-mapper	221029.Q76H36_9CAUD	NA	NA
UHGV-0163616_42	PHROG	phrog_10407	NA	unknown function
UHGV-0163616_43	PHROG	phrog_646	NA	unknown function
UHGV-0163616_43	UniRef90	UniRef90_P68657	Lambda prophage-derived protein ea10	NA
UHGV-0163616_43	eggNOG-mapper	199310.c1541	NA	NA
UHGV-0163616_43	Pfam	PF10800	NA	DUF2528
UHGV-0163616_43	Structural annotation	PF10800	NA	NA
UHGV-0163616_44	PHROG	phrog_550	CIII anti-termination	transcription regulation
UHGV-0163616_44	eggNOG-mapper	1127357.I1TEF0_9CAUD	NA	NA
UHGV-0163616_45	PHROG	phrog_17766	NA	unknown function
UHGV-0163616_46	PHROG	phrog_3486	NA	unknown function
UHGV-0163616_47	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163616_47	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163616_47	UniRef90	UniRef90_A0A3U7R0J2	DNA recombinase	NA
UHGV-0163616_47	eggNOG-mapper	1147153.K7PKG9_9CAUD	DNA metabolic process	NA
UHGV-0163616_47	Pfam	PF03837	RecT family	RecT
UHGV-0163616_47	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163616_47	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0163616_48	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0163616_48	UniRef90	UniRef90_A0A4U6LP76	Siphovirus Gp157 family protein	NA
UHGV-0163616_48	eggNOG-mapper	1147143.K7P6T5_9CAUD	Siphovirus Gp157	NA
UHGV-0163616_48	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0163616_48	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0163616_49	PHROG	phrog_11492	NA	unknown function
UHGV-0163616_49	eggNOG-mapper	716541.ECL_01293	NA	NA
UHGV-0163616_50	PHROG	phrog_1117	NA	unknown function
UHGV-0163616_50	UniRef90	UniRef90_A0A376HSI6	NA	NA
UHGV-0163616_50	eggNOG-mapper	1147150.K7PJV9_9CAUD	NA	NA
UHGV-0163616_50	Pfam	PF10930	NA	DUF2737
UHGV-0163616_50	Structural annotation	PF10930	NA	NA
UHGV-0163616_51	PHROG	phrog_18739	NA	unknown function
UHGV-0163616_51	UniRef90	UniRef90_A0A826X1W7	Ead/Ea22-like family protein	NA
UHGV-0163616_51	eggNOG-mapper	379329.Q08J58_9CAUD	Ead/Ea22-like protein	NA
UHGV-0163616_51	PADLOC	DpdH_00016	DpdH	DPD
UHGV-0163616_51	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0163616_51	Structural annotation	PF13935	NA	NA
UHGV-0163616_52	PHROG	phrog_1222	NA	unknown function
UHGV-0163616_52	eggNOG-mapper	1147152.K7PKJ7_9CAUD	NA	NA
UHGV-0163616_53	PHROG	phrog_28084	NA	unknown function
UHGV-0163616_53	UniRef90	UniRef90_A0A8F9DRF4	NA	NA
UHGV-0163616_53	eggNOG-mapper	199310.c1524	NA	NA
UHGV-0163616_53	AcrCatalog	cluster_341	NA	NA
UHGV-0163616_53	Pfam	PF04447	dATP/dGTP pyrophosphohydrolase	dATP-dGTP_PPHyd
UHGV-0163616_53	Pfam	PF04448	NA	DUF551
UHGV-0163616_54	PHROG	phrog_2945	NA	unknown function
UHGV-0163616_54	UniRef90	UniRef90_A0A0F3SMT6	Eag protein	NA
UHGV-0163616_54	eggNOG-mapper	1524881.A0A088CQ59_9CAUD	NA	NA